YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	SEC59
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.51
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	50	0.76
Transmembrane Helix	51	69	0.60
Non-Cytoplasmic	70	85	0.43
Transmembrane Helix	86	107	0.90
Cytoplasmic	108	122	0.44
Transmembrane Helix	123	146	0.86
Non-Cytoplasmic	147	153	0.42
Transmembrane Helix	154	172	0.87
Cytoplasmic	173	179	0.46
Transmembrane Helix	180	198	0.75
Non-Cytoplasmic	199	228	0.62
Transmembrane Helix	229	249	0.87
Cytoplasmic	250	257	0.85
Transmembrane Helix	258	278	0.94
Non-Cytoplasmic	279	300	0.89
Transmembrane Helix	301	318	0.96
Cytoplasmic	319	330	0.81
Transmembrane Helix	331	346	0.90
Non-Cytoplasmic	347	352	0.59
Transmembrane Helix	353	373	0.59
Cytoplasmic	374	392	0.65
Transmembrane Helix	393	413	0.71
Non-Cytoplasmic	414	418	0.61
Transmembrane Helix	419	439	0.74
Cytoplasmic	440	449	0.82
Transmembrane Helix	450	470	0.88
Non-Cytoplasmic	471	481	0.64
Transmembrane Helix	482	501	0.51
Cytoplasmic	502	519	0.54

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MVAIIPHASF TTIKLTQKTE GSQMPTEEIC KINMRTRKFD VGGNSRDFEC FYSNFVQTVI  60
   61 LLGTFFYCVE RLQPWSIVTA DISYKQIFVN VFVVCLIMVG LIFTKYWQHG YKSLPKFDTI 120
  121 YSLYLPFMVS LLFDTSSTVI NTILILSVLN SYRWRTQLVV IILQLCLIFF NFEAGDRLKN 180
  181 IISIVINSLL SLILKYIGQL KSLDNIDSNL FSILLTNILY VSEAGTVHFR ILKGIILALT 240
  241 TIISINYVLK KVMHFKPFML SISFAIGLPL FANTFIHLED GENPLLWLVK YILESTIRQK 300
  301 ILFAWSSILI LSIPSILIEK DSLSLNTSRK LWHFIIFLLI IPSFQMDSNF VKIALSGTIP 360
  361 VFLSIEYIRF QNLPPLGSAI ELQLRRFADD RDHSGPLIIS YLYLLFGIST PLLMNNSPMG 420
  421 LIGLGIGDSL ASIIGKRYGR IRWKGTQKTL EGTLAFIVTS FIVCLVLLRF DKAAIFNHLT 480
  481 TLQLLTLCTL SGVLEGNSVL NDNILIPAFM MICEKLITL