YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	HXT2
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.83
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	49	0.99
Transmembrane Helix	50	72	0.91
Non-Cytoplasmic	73	105	0.95
Transmembrane Helix	106	125	0.94
Cytoplasmic	126	134	0.78
Transmembrane Helix	135	154	0.96
Non-Cytoplasmic	155	160	0.91
Transmembrane Helix	161	183	0.92
Cytoplasmic	184	194	0.81
Transmembrane Helix	195	213	0.94
Non-Cytoplasmic	214	227	0.82
Transmembrane Helix	228	247	0.90
Cytoplasmic	248	310	0.95
Transmembrane Helix	311	330	0.83
Non-Cytoplasmic	331	350	0.85
Transmembrane Helix	351	372	0.92
Cytoplasmic	373	379	0.94
Transmembrane Helix	380	403	0.89
Non-Cytoplasmic	404	418	0.90
Transmembrane Helix	419	443	0.89
Cytoplasmic	444	454	0.91
Transmembrane Helix	455	477	0.88
Non-Cytoplasmic	478	482	0.76
Transmembrane Helix	483	505	0.88
Cytoplasmic	506	541	0.98

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSEFATSRVE SGSQQTSIHS TPIVQKLETD ESPIQTKSEY TNAELPAKPI AAYWTVICLC  60
   61 LMIAFGGFVF GWDTGTISGF VNQTDFKRRF GQMKSDGTYY LSDVRTGLIV GIFNIGCAFG 120
  121 GLTLGRLGDM YGRRIGLMCV VLVYIVGIVI QIASSDKWYQ YFIGRIISGM GVGGIAVLSP 180
  181 TLISETAPKH IRGTCVSFYQ LMITLGIFLG YCTNYGTKDY SNSVQWRVPL GLNFAFAIFM 240
  241 IAGMLMVPES PRFLVEKGRY EDAKRSLAKS NKVTIEDPSI VAEMDTIMAN VETERLAGNA 300
  301 SWGELFSNKG AILPRVIMGI MIQSLQQLTG NNYFFYYGTT IFNAVGMKDS FQTSIVLGIV 360
  361 NFASTFVALY TVDKFGRRKC LLGGSASMAI CFVIFSTVGV TSLYPNGKDQ PSSKAAGNVM 420
  421 IVFTCLFIFF FAISWAPIAY VIVAESYPLR VKNRAMAIAV GANWIWGFLI GFFTPFITSA 480
  481 IGFSYGYVFM GCLVFSFFYV FFFVCETKGL TLEEVNEMYV EGVKPWKSGS WISKEKRVSE 540
  541 E