YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	ATR1
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.80
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	68	0.88
Transmembrane Helix	69	87	0.80
Non-Cytoplasmic	88	108	0.85
Transmembrane Helix	109	129	0.90
Cytoplasmic	130	137	0.87
Transmembrane Helix	138	158	0.94
Non-Cytoplasmic	159	168	0.85
Transmembrane Helix	169	191	0.89
Cytoplasmic	192	198	0.86
Transmembrane Helix	199	222	0.93
Non-Cytoplasmic	223	232	0.84
Transmembrane Helix	233	252	0.96
Cytoplasmic	253	262	0.81
Transmembrane Helix	263	284	0.90
Non-Cytoplasmic	285	294	0.79
Transmembrane Helix	295	314	0.97
Cytoplasmic	315	334	0.90
Transmembrane Helix	335	356	0.94
Non-Cytoplasmic	357	367	0.86
Transmembrane Helix	368	390	0.90
Cytoplasmic	391	398	0.81
Transmembrane Helix	399	420	0.92
Non-Cytoplasmic	421	428	0.82
Transmembrane Helix	429	450	0.89
Cytoplasmic	451	462	0.80
Transmembrane Helix	463	484	0.87
Non-Cytoplasmic	485	501	0.91
Transmembrane Helix	502	522	0.94
Cytoplasmic	523	542	0.93

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGNQSLVVLT ESKGEYENET ELPVKKSSRD NNIGESLTAT AFTQSEDEMV DSNQKWQNPN  60
   61 YFKYAWQEYL FIFTCMISQL LNQAGTTQTL SIMNILSDSF GSEGNSKSWL MASFPLVSGS 120
  121 FILISGRLGD IYGLKKMLLV GYVLVIIWSL ICGITKYSGS DTFFIISRAF QGLGIAFVLP 180
  181 NVLGIIGNIY VGGTFRKNIV ISFVGAMAPI GATLGCLFAG LIGTEDPKQW PWAFYAYSIA 240
  241 AFINFVLSIY AIPSTIPTNI HHFSMDWIGS VLGVIGLILL NFVWNQAPIS GWNQAYIIVI 300
  301 LIISVIFLVV FIIYEIRFAK TPLLPRAVIK DRHMIQIMLA LFFGWGSFGI FTFYYFQFQL 360
  361 NIRQYTALWA GGTYFMFLIW GIIAALLVGF TIKNVSPSVF LFFSMVAFNV GSIMASVTPV 420
  421 HETYFRTQLG TMIILSFGMD LSFPASSIIF SDNLPMEYQG MAGSLVNTVV NYSMSLCLGM 480
  481 GATVETQVNS DGKHLLKGYR GAQYLGIGLA SLACMISGLY MVESFIKGRR ARAAAEYDCT 540
  541 VA