YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	ECM7
Protein type:	Transmembrane
Type Confidence:	0.98
Topology Confidence:	0.67
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MVMSRIRDTI ARPFQNLTAL EKVVQWLRLG TTLLIISFGL ALTVGPLSSP RTLYMSRLDT  60
   61 YSADITTGLF TVLRESMEQS TSTEENNGVG LTTSELYILT AYTESQIKNV PQYITVSLYG 120
  121 RCDSTYTMVE VFDSEGNMHS VKNSTTKSTC SSIGTDYLFD YREVLESLGL DIILDYAYNK 180
  181 IGSQQAESSA YTTYMRSLKH KKANVLHLLY AVISFQVCML FFMIWYYYIK GRFMNALKER 240
  241 ALVHINSLLS LVVFIGGLIS SISLAWVNYT IQSRINTELE AFGFSYHLGV TWFALLWCFA 300
  301 GLISVSCLAW SGLEWCISDN GTSYGGGIDD KFLGYQAGVF TDADLDDETS YSQRYPQRQS 360
  361 TSGEAELMRN SDTMATIRKT SDVDLNSEND ANTSLDHGNP TANISNGGKH EPFATREEFE 420
  421 LQDIRFRSSN DSEESMQRVI KPSSALQF

Type	Start	End	Confidence
Cytoplasmic	1	25	0.67
Transmembrane Helix	26	47	0.82
Non-Cytoplasmic	48	205	0.72
Transmembrane Helix	206	229	0.92
Cytoplasmic	230	244	0.65
Transmembrane Helix	245	267	0.89
Non-Cytoplasmic	268	287	0.67
Transmembrane Helix	288	313	0.82
Cytoplasmic	314	448	0.72