YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	TDA5
Protein type:	Transmembrane
Type Confidence:	0.87
Topology Confidence:	0.24
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNIDCLCRWV VLPLLRYPLL VALVLRWSLS DSISICLTIY TLLINAFLIA NSYIKRSGQV  60
   61 AWKSLREFKN GIVLITGGSK GLGRAIVSQL LQDYSNLTIL NVDICPSSVR NTRVKDLICD 120
  121 LSDDEEVAAL LNLLKRKYKN EIRLIVNNAG VRANFTGFNG MERDNLDKIF KINTFAPLQF 180
  181 IQELAPSRHS TRQCYIVNIA SILGILTPAK VAAYAASKAA LIAFHQSYSF ELQNEGVRNI 240
  241 RTLLVTPGQL NTEMFAGFKP PRQFFAPVID ITTLAAKIVR YCELGQRGQL NEPFYCSFAH 300
  301 LLMCVPYSLQ RIVRSFSRID CCLPDE

Type	Start	End	Confidence
Cytoplasmic	1	8	0.59
Transmembrane Helix	9	27	0.51
Non-Cytoplasmic	28	32	0.53
Transmembrane Helix	33	54	0.72
Cytoplasmic	55	194	0.51
Transmembrane Helix	195	209	0.24
Non-Cytoplasmic	210	326	0.68