YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|190405452
Protein type:	Transmembrane with Signal Peptide
Type Confidence:	0.66
Topology Confidence:	0.65
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MRNFFTLFFA AIFSLGALIL AIVACAGSTK NYSPINKIYC AELDLSQMKV STVLPSLSSA  60
   61 TLSSLGLPSY INIGLWSYCT VDSSHNIQSC SSPHGIQNFN LSSLVYDNIN NNEALELMDS 120
  121 VASVVLPEKL KSKMTYYNNL VKCMFITILI GIVLTFVNLV FNVLRWIIHI RPLTWFGAFF 180
  181 SFFAFAALLV SIGSCLGTYS YIKYILKHNY SDYGISMSIG RNYQGLMWGA VVGALLNFIL 240
  241 WCSVRSRPTV IYANAPIEEK PLI

Type	Start	End	Confidence
Signal Peptide	1	26	0.65
N-region	1	17
H-region	18	23
C-region	24	26
Cleavage Site	26	27
Non-Cytoplasmic	27	143	0.81
Transmembrane Helix	144	164	0.92
Cytoplasmic	165	174	0.67
Transmembrane Helix	175	200	0.84
Non-Cytoplasmic	201	223	0.82
Transmembrane Helix	224	244	0.91
Cytoplasmic	245	263	0.87