YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	SEC61
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.55
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	32	0.99
Transmembrane Helix	33	55	0.93
Non-Cytoplasmic	56	74	0.95
Transmembrane Helix	75	95	0.91
Cytoplasmic	96	115	0.88
Transmembrane Helix	116	137	0.91
Non-Cytoplasmic	138	144	0.82
Transmembrane Helix	145	167	0.92
Cytoplasmic	168	174	0.85
Transmembrane Helix	175	195	0.82
Non-Cytoplasmic	196	243	0.65
Transmembrane Helix	244	263	0.92
Cytoplasmic	264	285	0.55
Transmembrane Helix	286	311	0.55
Non-Cytoplasmic	312	361	0.42
Transmembrane Helix	362	381	0.71
Cytoplasmic	382	416	0.84
Transmembrane Helix	417	435	0.76
Non-Cytoplasmic	436	438	0.55
Transmembrane Helix	439	459	0.60
Cytoplasmic	460	480	0.61

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSSNRVLDLF KPFESFLPEV IAPERKVPYN QKLIWTGVSL LIFLILGQIP LYGIVSSETS  60
   61 DPLYWLRAML ASNRGTLLEL GVSPIITSSM IFQFLQGTQL LQIRPESKQD RELFQIAQKV 120
  121 CAIILILGQA LVVVMTGNYG APSDLGLPIC LLLIFQLMFA SLIVMLLDEL LSKGYGLGSG 180
  181 ISLFTATNIA EQIFWRAFAP TTVNSGRGKE FEGAVIAFFH LLAVRKDKKR ALVEAFYRTN 240
  241 LPNMFQVLMT VAIFLFVLYL QGFRYELPIR STKVRGQIGI YPIKLFYTSN TPIMLQSALT 300
  301 SNIFLISQIL FQKYPTNPLI RLIGVWGIRP GTQGPQMALS GLAYYIQPLM SLSEALLDPI 360
  361 KTIVYITFVL GSCAVFSKTW IEISGTSPRD IAKQFKDQGM VINGKRETSI YRELKKIIPT 420
  421 AAAFGGATIG ALSVGSDLLG TLGSGASILM ATTTIYGYYE AAAKEGGFTK NLVPGFSDLM 480
  481