YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	ATG33
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.50
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSVCLAITKG IAVSSIGLYS GLLASASLIT STTPLEVLTG SLTPTLTTLK NAATALGAFA  60
   61 STFFCVSFFG APPSLRHPYL LYGMLVAPLS SFVLGCASNY QSRKYSKVSK ESSLFPEDSK 120
  121 LAASELSDSI IDLGEDNHAS ENTPRDGKPA ATTVSKPAEA LHTGPPIHTK NLIAATAIAI 180
  181 VGFVQAVIGV YGEGQFI

Type	Start	End	Confidence
Non-Cytoplasmic	1	10	0.50
Transmembrane Helix	11	35	0.66
Cytoplasmic	36	50	0.55
Transmembrane Helix	51	71	0.88
Non-Cytoplasmic	72	78	0.63
Transmembrane Helix	79	100	0.85
Cytoplasmic	101	171	0.80
Transmembrane Helix	172	192	0.86
Non-Cytoplasmic	193	197	0.75