YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	FKS1
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.33
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	451	0.88
Transmembrane Helix	452	468	0.83
Non-Cytoplasmic	469	489	0.87
Transmembrane Helix	490	513	0.87
Cytoplasmic	514	531	0.87
Transmembrane Helix	532	552	0.95
Non-Cytoplasmic	553	561	0.87
Transmembrane Helix	562	589	0.82
Cytoplasmic	590	599	0.84
Transmembrane Helix	600	616	0.56
Non-Cytoplasmic	617	622	0.42
Transmembrane Helix	623	641	0.33
Cytoplasmic	642	675	0.55
Transmembrane Helix	676	710	0.68
Non-Cytoplasmic	711	1301	0.50
Transmembrane Helix	1302	1322	0.49
Cytoplasmic	1323	1357	0.68
Transmembrane Helix	1358	1379	0.85
Non-Cytoplasmic	1380	1402	0.70
Transmembrane Helix	1403	1425	0.75
Cytoplasmic	1426	1439	0.75
Transmembrane Helix	1440	1465	0.77
Non-Cytoplasmic	1466	1471	0.68
Transmembrane Helix	1472	1491	0.91
Cytoplasmic	1492	1559	0.89
Transmembrane Helix	1560	1582	0.88
Non-Cytoplasmic	1583	1601	0.80
Transmembrane Helix	1602	1631	0.75
Cytoplasmic	1632	1640	0.74
Transmembrane Helix	1641	1663	0.89
Non-Cytoplasmic	1664	1668	0.75
Transmembrane Helix	1669	1687	0.63
Cytoplasmic	1688	1799	0.70
Transmembrane Helix	1800	1822	0.92
Non-Cytoplasmic	1823	1876	0.96

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNTDQQPYQG QTDYTQGPGN GQSQEQDYDQ YGQPLYPSQA DGYYDPNVAA GTEADMYGQQ  60
   61 PPNESYDQDY TNGEYYGQPP NMAAQDGENF SDFSSYGPPG TPGYDSYGGQ YTASQMSYGE 120
  121 PNSSGTSTPI YGNYDPNAIA MALPNEPYPA WTADSQSPVS IEQIEDIFID LTNRLGFQRD 180
  181 SMRNMFDHFM VLLDSRSSRM SPDQALLSLH ADYIGGDTAN YKKWYFAAQL DMDDEIGFRN 240
  241 MSLGKLSRKA RKAKKKNKKA MEEANPEDTE ETLNKIEGDN SLEAADFRWK AKMNQLSPLE 300
  301 RVRHIALYLL CWGEANQVRF TAECLCFIYK CALDYLDSPL CQQRQEPMPE GDFLNRVITP 360
  361 IYHFIRNQVY EIVDGRFVKR ERDHNKIVGY DDLNQLFWYP EGIAKIVLED GTKLIELPLE 420
  421 ERYLRLGDVV WDDVFFKTYK ETRTWLHLVT NFNRIWVMHI SIFWMYFAYN SPTFYTHNYQ 480
  481 QLVDNQPLAA YKWASCALGG TVASLIQIVA TLCEWSFVPR KWAGAQHLSR RFWFLCIIFG 540
  541 INLGPIIFVF AYDKDTVYST AAHVVAAVMF FVAVATIIFF SIMPLGGLFT SYMKKSTRRY 600
  601 VASQTFTAAF APLHGLDRWM SYLVWVTVFA AKYSESYYFL VLSLRDPIRI LSTTAMRCTG 660
  661 EYWWGAVLCK VQPKIVLGLV IATDFILFFL DTYLWYIIVN TIFSVGKSFY LGISILTPWR 720
  721 NIFTRLPKRI YSKILATTDM EIKYKPKVLI SQVWNAIIIS MYREHLLAID HVQKLLYHQV 780
  781 PSEIEGKRTL RAPTFFVSQD DNNFETEFFP RDSEAERRIS FFAQSLSTPI PEPLPVDNMP 840
  841 TFTVLTPHYA ERILLSLREI IREDDQFSRV TLLEYLKQLH PVEWECFVKD TKILAEETAA 900
  901 YEGNENEAEK EDALKSQIDD LPFYCIGFKS AAPEYTLRTR IWASLRSQTL YRTISGFMNY 960
  961 SRAIKLLYRV ENPEIVQMFG GNAEGLEREL EKMARRKFKF LVSMQRLAKF KPHELENAEF1020
 1021 LLRAYPDLQI AYLDEEPPLT EGEEPRIYSA LIDGHCEILD NGRRRPKFRV QLSGNPILGD1080
 1081 GKSDNQNHAL IFYRGEYIQL IDANQDNYLE ECLKIRSVLA EFEELNVEQV NPYAPGLRYE1140
 1141 EQTTNHPVAI VGAREYIFSE NSGVLGDVAA GKEQTFGTLF ARTLSQIGGK LHYGHPDFIN1200
 1201 ATFMTTRGGV SKAQKGLHLN EDIYAGMNAM LRGGRIKHCE YYQCGKGRDL GFGTILNFTT1260
 1261 KIGAGMGEQM LSREYYYLGT QLPVDRFLTF YYAHPGFHLN NLFIQLSLQM FMLTLVNLSS1320
 1321 LAHESIMCIY DRNKPKTDVL VPIGCYNFQP AVDWVRRYTL SIFIVFWIAF VPIVVQELIE1380
 1381 RGLWKATQRF FCHLLSLSPM FEVFAGQIYS SALLSDLAIG GARYISTGRG FATSRIPFSI1440
 1441 LYSRFAGSAI YMGARSMLML LFGTVAHWQA PLLWFWASLS SLIFAPFVFN PHQFAWEDFF1500
 1501 LDYRDYIRWL SRGNNQYHRN SWIGYVRMSR ARITGFKRKL VGDESEKAAG DASRAHRTNL1560
 1561 IMAEIIPCAI YAAGCFIAFT FINAQTGVKT TDDDRVNSVL RIIICTLAPI AVNLGVLFFC1620
 1621 MGMSCCSGPL FGMCCKKTGS VMAGIAHGVA VIVHIAFFIV MWVLESFNFV RMLIGVVTCI1680
 1681 QCQRLIFHCM TALMLTREFK NDHANTAFWT GKWYGKGMGY MAWTQPSREL TAKVIELSEF1740
 1741 AADFVLGHVI LICQLPLIII PKIDKFHSIM LFWLKPSRQI RPPIYSLKQT RLRKRMVKKY1800
 1801 CSLYFLVLAI FAGCIIGPAV ASAKIHKHIG DSLDGVVHNL FQPINTTNND TGSQMSTYQS1860
 1861 HYYTHTPSLK TWSTIK