YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	SYM1
Protein type:	Transmembrane
Type Confidence:	0.93
Topology Confidence:	0.53
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKLLHLYEAS LKRRPKTTNA IMTGALFGIG DVSAQLLFPT SKVNKGYDYK RTARAVIYGS  60
   61 LIFSFIGDKW YKILNNKIYM RNRPQYHWSN MVLRVAVDQL AFAPLGLPFY FTCMSIMEGR 120
  121 SFDVAKLKIK EQWWPTLLTN WAVWPLFQAI NFSVVPLQHR LLAVNVVAIF WNTYLSYKNS 180
  181 KVMEKDKVPV HYPPVVE

Type	Start	End	Confidence
Cytoplasmic	1	18	0.86
Transmembrane Helix	19	38	0.83
Non-Cytoplasmic	39	54	0.83
Transmembrane Helix	55	71	0.57
Cytoplasmic	72	90	0.52
Transmembrane Helix	91	112	0.72
Non-Cytoplasmic	113	140	0.54
Transmembrane Helix	141	175	0.53
Cytoplasmic	176	197	0.75