YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|113417848
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.83
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MQDFESDTFF PEIDLEKYKI LPEYPGILSD RENPCLYTSI PRASSLSGIK FSVISFPTQD  60
   61 PRGEDTRDAS PFPTPIGCRV SREANQCRRG PSSKVPTHPP GLRISSDAEM RVTAPRTLLL 120
  121 LLWGAVALTE TWAGSHSMRY FHTSVSRPGR GEPRFISVGY VDGTQFVRFD SDAASPRTEP 180
  181 RAPWIEQEGP EYWDRNTQIS KTNTQTYRES LRNLRGYYNQ SEAGSHTLQR MYGCDVGPDG 240
  241 RLLRGHDQSA YDGKDYIALN EDLSSWTAAD TAAQITQRKW EAARVAEQLR AYLEGTCVEW 300
  301 LRRHLENGKE TLQRADPPKT HVTHHPISDH EATLRCWALG FYPAEITLTW QRDGEDQTQD 360
  361 TELVETRPAG DRTFQKWAAV VVPSGEEQRY TCHVQHEGLP KPLTLRWEPS SQSTIPIVGI 420
  421 VAGLAVLAVV VIGAVVATVM CRRKSSGGKG GSYSQAASSD SAQGSDVSLT A

Type	Start	End	Confidence
Non-Cytoplasmic	1	414	0.83
Transmembrane Helix	415	439	0.91
Cytoplasmic	440	471	0.97