YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	ARV1
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.52
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MICITCMRPV DSLYTVYSND HIQLTDCPYC QETVDKYVEI DNVLLFIDLL LLKAGAYRHL  60
   61 VFNALELHLS KYPKRKALND CQCLRDYTQA LLFNVKNWFC KYDRLNRLWL LLLSFEIYLT 120
  121 WVTEESKYIY YLNRNNNDGK LIMLSKKLPE SFKWDSAIMR NTITSKVFTW SPPIQYLYFA 180
  181 SYCILDVSLF HTFTQYFILK KLHWKHYSVS SKDVISYTIL LSYGAKIFPI LMLIWPYDTL 240
  241 ISMSIIKWVA NLYIIESLKI VTNLSYWNII KIFISVSLLR YFMVKPILIV FVAKFNFSVI 300
  301 KNLIHQEFIL LLQKSGTYLL L

Type	Start	End	Confidence
Cytoplasmic	1	104	0.68
Transmembrane Helix	105	122	0.52
Non-Cytoplasmic	123	175	0.84
Transmembrane Helix	176	198	0.82
Cytoplasmic	199	213	0.86
Transmembrane Helix	214	235	0.83
Non-Cytoplasmic	236	263	0.63
Transmembrane Helix	264	293	0.55
Cytoplasmic	294	321	0.58