YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|113413682
Protein type:	Transmembrane
Type Confidence:	0.97
Topology Confidence:	0.31
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	67	0.91
Transmembrane Helix	68	87	0.78
Non-Cytoplasmic	88	98	0.60
Transmembrane Helix	99	116	0.70
Cytoplasmic	117	264	0.80
Transmembrane Helix	265	287	0.55
Non-Cytoplasmic	288	312	0.92
Transmembrane Helix	313	335	0.90
Cytoplasmic	336	343	0.90
Transmembrane Helix	344	367	0.88
Non-Cytoplasmic	368	387	0.63
Transmembrane Helix	388	403	0.59
Cytoplasmic	404	526	0.67
Transmembrane Helix	527	541	0.31
Non-Cytoplasmic	542	659	0.60
Transmembrane Helix	660	685	0.80
Cytoplasmic	686	701	0.92
Transmembrane Helix	702	726	0.85
Non-Cytoplasmic	727	735	0.77
Transmembrane Helix	736	755	0.93
Cytoplasmic	756	810	0.99

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MVMMMMMKVL LLLMKQRGAG LPAPAGVEPR PSSHHPKARV RLQGDESVRP RGCSQLWAFT  60
   61 RHSPRQRGFS ARSLFWFVVL PAPTFVPNFP WRWLGGVPHI VPPAATPGPF VVCRLSQRGV 120
  121 GGRDIPGRRN RGVRGKDALP CSHPRSAPHD AGQPFSGDAR HPRAEREVGR ALLPATAPGE 180
  181 GGRMGVRVCM RSLPFAAAAL GSGGRVPEQP PVRMDRVVER VRKAALWGAW RGAACPARAS 240
  241 ERPPERLMHG SGDGLLGFSF VRASLTVFGE EAGPSFLLAV LCAVVWGGRG EDVVSDVQAC 300
  301 PAEQGFLLAE PSVFGVNFVV CQLFALLAAI WFRTYLHSSK TSSFIRHVVA TLLGLYLALF 360
  361 CFGWYALHFL VQSGISYCIM IIIGVENMHN YCFVFALGYL TVCQVTRVYI FDYGQYSADF 420
  421 SGPMMIITQK ITSLACEIHD GMFRKDEELT SSQRDLAVRR MPSLLEYLSY NCNFMGILAG 480
  481 PLCSYKDYIT FIEGRSYHIT QSGENGKEET QYERTEPSPN TAVVQKLLVC GLSLLFHLTI 540
  541 CTTLPVEYNI DEHFQATASW PTKIIYLYIS LLAARPKYYF AWTLADAINN AAGFGFRGYD 600
  601 ENGAARWDLI SNLRIQQIEM STSFKMFLDN WNIQTALWLK RVCYERTSFS PTIQTFILSA 660
  661 IWHGVYPGYY LTFLTGVLMT LAARAMRNNF RHYFIEPSQL KLFYDVITWI VTQVAISYTV 720
  721 VPFVLLSIKP SLTFYSSWYY CLHILGILVL LLLPVKKTQR RKNTHENIQL SQSKKFDEGE 780
  781 NSLGQNSFST TNNVCNQNQE IASRHSSLKQ