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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: CSF1
Protein type: Transmembrane
Type Confidence: 0.99
Topology Confidence: 0.93
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MEAISQLRGV PLTHQKDFSW VFLVDWILTV VVCLTMIFYM GRIYAYLVSF ILEWLLWKRA  60
   61 KIKINVETLR VSLLGGRIHF KNLSVIHKDY TISVLEGSLT WKYWLLNCRK AELIENNKSS 120
  121 SGKKAKLPCK ISVECEGLEI FIYNRTVAYD NVINLLSKDE RDKFEKYLNE HSFPEPFSDG 180
  181 SSADKLDEDL SESAYTTNSD ASIVNDRDYQ ETDIGKHPKL LMFLPIELKF SRGSLLLGNK 240
  241 FTPSVMILSY ESGKGIIDVL PPKERLDLYR NKTQMEFKNF EISIKQNIGY DDAIGLKFKI 300
  301 DRGKVSKLWK TFVRVFQIVT KPVVPKKTKK SAGTSDDNFY HKWKGLSLYK ASAGDAKASD 360
  361 LDDVEFDLTN HEYAKFTSIL KCPKVTIAYD VDVPGVVPHG AHPTIPDIDG PDVGNNGAPP 420
  421 DFALDVQIHG GSICYGPWAQ RQVSHLQRVL SPVVSRTAKP IKKLPPGSRR IYTLFRMNIS 480
  481 IMEDTTWRIP TRESSKDPEF LKHYKETNEE YRPFGWMDLR FCKDTYANFN ISVCPTVQGF 540
  541 QNNFHVHFLE TEIRSSVNHD ILLKSKVFDI DGDIGYPLGW NSKAIWIINM KSEQLEAFLL 600
  601 REHITLVADT LSDFSAGDPT PYELFRPFVY KVNWEMEGYS IYLNVNDHNI VNNPLDFNEN 660
  661 CYLSLHGDKL SIDVTVPRES ILGTYTDMSY EISTPMFRMM LNTPPWNTLN EFMKHKEVGR 720
  721 AYDFTIKGSY LLYSELDIDN VDTLVIECNS KSTVLHCYGF VMRYLTNVKM NYFGEFFNFV 780
  781 TSEEYTGVLG AREVGDVTTK SSVADLASTV DSGYQNSSLK NESEDKGPMK RSDLKRTTNE 840
  841 TDIWFTFSVW DGALILPETI YSFDPCIALH FAELVVDFRS CNYYMDIMAV LNGTSIKRHV 900
  901 SKQINEVFDF IRRNNGADEQ EHGLLSDLTI HGHRMYGLPP TEPTYFCQWD INLGDLCIDS 960
  961 DIEFIKGFFN SFYKIGFGYN DLENILLYDT ETINDMTSLT VHVEKIRIGL KDPVMKSQSV1020
 1021 ISAESILFTL IDFENEKYSQ RIDVKIPKLT ISLNCVMGDG VDTSFLKFET KLRFTNFEQY1080
 1081 KDIDKKRSEQ RRYITIHDSP YHRCPFLLPL FYQDSDTYQN LYGAIAPSSS IPTLPLPTLP1140
 1141 DTIDYIIEDI VGEYATLLET TNPFKNIFAE TPSTMEPSRA SFSEDDNDEE ADPSSFKPVA1200
 1201 FTEDRNHERD NYVVDVSYIL LDVDPLLFIF AKSLLEQLYS ENMVQVLDDI EIGIVKRLSN1260
 1261 LQEGITSISN IDIHIAYLNL IWQETGEEGF ELYLDRIDYQ MSEKSLEKNR TNKLLEVAAL1320
 1321 AKVKTVRVTV NQKKNPDLSE DRPPALSLGI EGFEVWSSTE DRQVNSLNLT SSDITIDESQ1380
 1381 MEWLFEYCSD QGNLIQEVCT SFNSIQNTRS NSKTELISKL TAASEYYQIS HDPYVITKPA1440
 1441 FIMRLSKGHV RENRSWKIIT RLRHILTYLP DDWQSNIDEV LKEKKYTSAK DAKNIFMSVF1500
 1501 STWRNWEFSD VARSYIYGKL FTAENEKHKQ NLIKKLLKCT MGSFYLTVYG EGYEVEHNFV1560
 1561 VADANLVVDL TPPVTSLPSN REETIEITGR VGSVKGKFSD RLLKLQDLIP LIAAVGEDDK1620
 1621 SDPKKELSKQ FKMNTVLLVD KSELQLVMDQ TKLMSRTVGG RVSLLWENLK DSTSQAGSLV1680
 1681 IFSQKSEVWL KHTSVILGEA QLRDFSVLAT TEAWSHKPTI LINNQCADLH FRAMSSTEQL1740
 1741 VTAITEIRES LMMIKERIKF KPKSKKKSQF VDQKINTVLS CYFSNVSSEV MPLSPFYIRH1800
 1801 EAKQLDIYFN KFGSNEILLS IWDTDFFMTS HQTKEQYLRF SFGDIEIKGG ISREGYSLIN1860
 1861 VDISISMIKL TFSEPRRIVN SFLQDEKLAS QGINLLYSLK PLFFSSNLPK KEKQAPSIMI1920
 1921 NWTLDTSITY FGVLVPVAST YFVFELHMLL LSLTNTNNGM LPEETKVTGQ FSIENILFLI1980
 1981 KERSLPIGLS KLLDFSIKVS TLQRTVDTEQ SFQVESSHFR VCLSPDSLLR LMWGAHKLLD2040
 2041 LSHYYSRRHA PNIWNTKMFT GKSDKSKEMP INFRSIHILS YKFCIGWIFQ YGAGSNPGLM2100
 2101 LGYNRLFSAY EKDFGKFTVV DAFFSVANGN TSSTFFSEGN EKDKYNRSFL PNMQISYWFK2160
 2161 RCGELKDWFF RFHGEALDVN FVPSFMDVIE STLQSMRAFQ ELKKNILDVS ESLRAENDNS2220
 2221 YASTSVESAS SSLAPFLDNI RSVNSNFKYD GGVFRVYTYE DIETKSEPSF EIKSPVVTIN2280
 2281 CTYKHDEDKV KPHKFRTLIT VDPTHNTLYA GCAPLLMEFS ESLQKMIKKH STDEKPNFTK2340
 2341 PSSQNVDYKR LLDQFDVAVK LTSAKQQLSL SCEPKAKVQA DVGFESFLFS MATNEFDSEQ2400
 2401 PLEFSLTLEH TKASIKHIFS REVSTSFEVG FMDLTLLFTH PDVISMYGTG LVSDLSVFFN2460
 2461 VKQLQNLYLF LDIWRFSSIL HTRPVQRTVN KEIEMSSLTS TNYADAGTEI PWCFTLIFTN2520
 2521 VSGDVDLGPS LGMISLRTQR TWLATDHYNE KRQLLHAFTD GISLTSEGRL SGLFEVANAS2580
 2581 WLSEVKWPPE KSKNTHPLVS TSLNIDDIAV KAAFDYHMFL IGTISNIHFH LHNEKDAKGV2640
 2641 LPDLLQVSFS SDEIILSSTA LVVANILDIY NTIVRMRQDN KISYMETLRD SNPGESRQPI2700
 2701 LYKDILRSLK LLRTDLSVNI SSSKVQISPI SLFDVEVLVI RIDKVSIRSE THSGKKLKTD2760
 2761 LQLQVLDVSA ALSTSKEELD EEVGASIAID DYMHYASKIV GGTIIDIPKL AVHMTTLQEE2820
 2821 KTNNLEYLFA CSFSDKISVR WNLGPVDFIK EMWTTHVKAL AVRRSQVANI SFGQTEEELE2880
 2881 ESIKKEEAAS KFNYIALEEP QIEVPQIRDL GDATPPMEWF GVNRKKFPKF THQTAVIPVQ2940
 2941 KLVYLAEKQY VKILDDTH

YRC Informatics Platform - Version 3.0
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