YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|113402542
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.40
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSGPDMYGGS KGCGNLPVSD LGLENSPASV SPPADEDKLQ GHERLLLPYL CAGGRVACRL  60
   61 GLQTGRSRPE VPLVEQPGRN RPGGTNGLPR GVGPRSPPFC LQWNGPGGTN GPRGCTTRTV 120
  121 VLSLCLQWNG PGGTNNGPGG TNGQPRGRCG PRRVSPAPWL WGTEERRPRG SEEPDAGFCA 180
  181 SFPVPRAPRE AHLDPPALCH SPRYACGGDC IRLSRLLLRF AWERPWWPRS WRPESLLRPH 240
  241 PRAVTVTHAA QPGGKIVRGC GFSMSSSVKT PALEELVPGS EEKPKGRSPL SWGSLFGHRS 300
  301 EKIVFAKSDG GTDENVLTVT ITETTVIESD LGVWSSRALL YLTLWFFFSF CTLFLNKYIL 360
  361 SLLGGEPSML GAVQMLSTTV IGCVKTLVPC CLYQHKARLS YPPNFLMTML FVGLMRFATV 420
  421 VLGLVSLKNV AVSFAETVKS SAPIFTVIMS RMILGEYTGL LVNLSLIPVM GGLALCTATE 480
  481 ISFNVLGFSA ALSTNIMDCL QNVFSKKLLS GDKYRFSAPE LQFYTSAAAV AMLVPARVFF 540
  541 TDVPVIGRSG KSFSYNQDVV LLLLTDGVLF HLQSVTAYAL MGKISPVTFS VASTVKHALS 600
  601 IWLSVIVFGN KITSLSAVGT ALVTVGVLLY NKARQHQQEA LQSLAAATGR APDDTVEPLL 660
  661 PQDPRQHP

Type	Start	End	Confidence
Cytoplasmic	1	338	0.71
Transmembrane Helix	339	360	0.90
Non-Cytoplasmic	361	369	0.60
Transmembrane Helix	370	393	0.66
Cytoplasmic	394	404	0.53
Transmembrane Helix	405	427	0.84
Non-Cytoplasmic	428	436	0.44
Transmembrane Helix	437	455	0.40
Cytoplasmic	456	456	0.46
Transmembrane Helix	457	483	0.73
Non-Cytoplasmic	484	520	0.56
Transmembrane Helix	521	541	0.79
Cytoplasmic	542	558	0.60
Transmembrane Helix	559	581	0.67
Non-Cytoplasmic	582	606	0.57
Transmembrane Helix	607	630	0.77
Cytoplasmic	631	668	0.76