YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	POM34
Protein type:	Transmembrane
Type Confidence:	0.85
Topology Confidence:	0.73
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKIQAGQLGL DDNDVPGPLP DTDSKPSSQS QNDTPMFKLG NFESPVLKEL SRRTVNKEME  60
   61 TQRIMTNVIA FAFWNLLVKF IKFFWNNTHV GRQFCNRLSR IHLYMLTFHT LKKANIIYHT 120
  121 TFSWLNAELL DYLFHLLISL NILFSLWKLL STVKVSDLNL TDRQKKLLGV DMQSSVDTGL 180
  181 QPQHPHYVST SKISQMAQNK THIPQTNLKN HPAYLFKGLE TPLKARQREM AEEQTKLQSQ 240
  241 SLHTKNVFGT LQRHSGISST LVSANNDNNS PHTPVTRKGY IPSSKYAYMM NSQSPRGKI

Type	Start	End	Confidence
Cytoplasmic	1	62	0.82
Transmembrane Helix	63	81	0.73
Non-Cytoplasmic	82	131	0.88
Transmembrane Helix	132	150	0.74
Cytoplasmic	151	299	0.75