YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|91687305, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.63
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNGVRGVNNA AVAVAPRAPL NVARRPDPVT EPPVVRWILT GVALLFLALF LVVPLVAVFY  60
   61 QALNKGLGFY LESLADPDAL SAIKLTVITA AIAVPLNLVF GLAASWCIAK FEFRGKALLT 120
  121 TLIDLPFSVS PVISGLIYVL MFGAQGWFGP WLQDHNIQII FAVPGIVMAT IFVTFPFVAR 180
  181 ELIPLMQAQG NDEEEAAHVL GASGWQIFRR VTLPNVKWGL LYGVILCNAR AMGEFGAVSV 240
  241 VSGHIRGQTD TMPLHVEILY NEYNFSAAFA VASVLALLAL VTLGLKLLAE RHMSAELSAA 300
  301 RDVPAYAGPI TPPASAAATA ATAATAATAT HAPHVSQQHP LKQGEL

Type	Start	End	Confidence
Cytoplasmic	1	36	0.96
Transmembrane Helix	37	60	0.88
Non-Cytoplasmic	61	84	0.89
Transmembrane Helix	85	108	0.88
Cytoplasmic	109	120	0.83
Transmembrane Helix	121	142	0.88
Non-Cytoplasmic	143	156	0.83
Transmembrane Helix	157	179	0.92
Cytoplasmic	180	217	0.96
Transmembrane Helix	218	238	0.85
Non-Cytoplasmic	239	264	0.87
Transmembrane Helix	265	288	0.89
Cytoplasmic	289	346	0.63