YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	YCT1
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.81
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	54	0.99
Transmembrane Helix	55	75	0.89
Non-Cytoplasmic	76	95	0.89
Transmembrane Helix	96	117	0.81
Cytoplasmic	118	125	0.79
Transmembrane Helix	126	147	0.90
Non-Cytoplasmic	148	154	0.72
Transmembrane Helix	155	176	0.92
Cytoplasmic	177	186	0.82
Transmembrane Helix	187	207	0.96
Non-Cytoplasmic	208	218	0.73
Transmembrane Helix	219	239	0.96
Cytoplasmic	240	284	0.95
Transmembrane Helix	285	302	0.92
Non-Cytoplasmic	303	320	0.89
Transmembrane Helix	321	343	0.91
Cytoplasmic	344	352	0.76
Transmembrane Helix	353	373	0.94
Non-Cytoplasmic	374	380	0.80
Transmembrane Helix	381	403	0.92
Cytoplasmic	404	413	0.90
Transmembrane Helix	414	435	0.88
Non-Cytoplasmic	436	445	0.88
Transmembrane Helix	446	469	0.92
Cytoplasmic	470	531	0.99

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSKVDVKIGA DSISSSDEIL VPSRLADVTL AFMEENDAAV PEITPEQEKK LKRKLFLTIF  60
   61 TFVSAINLLL YMDKATLSYD SILGFFEDTG LTQNTYNTVN TLFYVGFAIG QFPGQYLAQK 120
  121 LPLGKFLGGL LATWTILIFL SCTAYNFSGV VALRFFLGLT ESVVIPILIT TMGMFFDASE 180
  181 RAAAQPFFFA ACMGSPIPTG FIAYGVLHIT NPSISLWKIF TIIIGGLTFI MTVVVILWFP 240
  241 NNPADVKFFS IQERVWIIRR VQASTGSSIE QKVFKKSQFR EAMKDYITWL FGLFFLLQQL 300
  301 ANNLPYQQNL LFEGMGGVDA LGSTLVSVAG AGFAVVCAFI ATLMLAKWKN ISALTAIFWT 360
  361 LPALVGSIAA AALPWDNKIG ILANICMAGQ IFGIPFIIAL SWASSSASGY TKKLTRSSVS 420
  421 LFAMGIANII SPQIWREKDS PRFLPAWIVQ IVLSFSLAPA ILLLIHFILK RRNNQRLKNY 480
  481 DENLQNYLDR IQLIESENPS SIEEGKVVTH ENNLAVFDLT DLENETFIYP L