YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	TPO1
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.78
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	145	0.99
Transmembrane Helix	146	169	0.92
Non-Cytoplasmic	170	178	0.79
Transmembrane Helix	179	202	0.87
Cytoplasmic	203	212	0.74
Transmembrane Helix	213	230	0.97
Non-Cytoplasmic	231	237	0.79
Transmembrane Helix	238	261	0.89
Cytoplasmic	262	271	0.86
Transmembrane Helix	272	295	0.89
Non-Cytoplasmic	296	301	0.89
Transmembrane Helix	302	322	0.94
Cytoplasmic	323	372	0.96
Transmembrane Helix	373	397	0.83
Non-Cytoplasmic	398	415	0.92
Transmembrane Helix	416	435	0.96
Cytoplasmic	436	454	0.94
Transmembrane Helix	455	475	0.95
Non-Cytoplasmic	476	483	0.80
Transmembrane Helix	484	506	0.86
Cytoplasmic	507	514	0.66
Transmembrane Helix	515	539	0.78
Non-Cytoplasmic	540	547	0.74
Transmembrane Helix	548	570	0.93
Cytoplasmic	571	586	0.95

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSDHSPISNK ENHLLPSDSS RSSSSDMHST GTTGTTGVEP VDFTGEGAKY TTATEGNGGA  60
   61 DLAIQRTTTM NSAAESEVNI TRRLTKILTG SVNEPDRVEV DYTNCAPMGG DRPYPPSLPS 120
  121 RDLYEVTFDG PNDPLHPFNW PMKKKVLLCL VLCLDSIAIA MCSSIFASAV PQICEIYHVI 180
  181 EVVAILGITL FVLGFAASPV IYAPLSELYG RKGVLVLSAF GFALFQFAVA TAENLQTIFI 240
  241 CRFFGGFIGA APMAVVPAAF ADMFDTNVRG KAIALFSLGV FVGPILSPVM GSYIAQRTTW 300
  301 RWLEYVVGCF ASAVFVAIVL FFEETHHPTI LVNKAKQMRK QSNNWGIHAA HEDVELSIKD 360
  361 IVQKTVTRPI IMLFVEPLLL FVTIYNSFVY GILYLLLEAY PLVFVEGYGF TENGELPYIA 420
  421 LIIGMMVCAA FIWYMDNDYL KRCRAKGKLV PEARLYAMVI AGTVFPIGIL WFCWTGYYPH 480
  481 KIHWMVPTVG GAFIGFGLMG IFLPCLNYII ESYLLLAASA VAANTFMRSA FGACFPLFAG 540
  541 YMFRGMGIGW AGLLLGLFAA AMIPVPLLFL KYGESIRKKS KYAYAA