YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	BPT1
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.32
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Non-Cytoplasmic	1	24	0.65
Transmembrane Helix	25	47	0.76
Cytoplasmic	48	111	0.75
Transmembrane Helix	112	132	0.88
Non-Cytoplasmic	133	142	0.84
Transmembrane Helix	143	162	0.92
Cytoplasmic	163	176	0.76
Transmembrane Helix	177	195	0.90
Non-Cytoplasmic	196	215	0.80
Transmembrane Helix	216	235	0.84
Cytoplasmic	236	330	0.77
Transmembrane Helix	331	356	0.81
Non-Cytoplasmic	357	357	0.28
Transmembrane Helix	358	374	0.32
Cytoplasmic	375	410	0.67
Transmembrane Helix	411	431	0.68
Non-Cytoplasmic	432	434	0.58
Transmembrane Helix	435	454	0.90
Cytoplasmic	455	519	0.96
Transmembrane Helix	520	541	0.92
Non-Cytoplasmic	542	549	0.81
Transmembrane Helix	550	577	0.72
Cytoplasmic	578	968	0.99
Transmembrane Helix	969	990	0.92
Non-Cytoplasmic	991	1019	0.89
Transmembrane Helix	1020	1040	0.84
Cytoplasmic	1041	1094	0.90
Transmembrane Helix	1095	1114	0.89
Non-Cytoplasmic	1115	1120	0.70
Transmembrane Helix	1121	1142	0.89
Cytoplasmic	1143	1206	0.76
Transmembrane Helix	1207	1228	0.91
Non-Cytoplasmic	1229	1559	0.82

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSSLEVVDGC PYGYRPYPDS GTNALNPCFI SVISAWQAVF FLLIGSYQLW KLYKNNKVPP  60
   61 RFKNFPTLPS KINSRHLTHL TNVCFQSTLI ICELALVSQS SDRVYPFILK KALYLNLLFN 120
  121 LGISLPTQYL AYFKSTFSMG NQLFYYMFQI LLQLFLILQR YYHGSSNERL TVISGQTAMI 180
  181 LEVLLLFNSV AIFIYDLCIF EPINELSEYY KKNGWYPPVH VLSYITFIWM NKLIVETYRN 240
  241 KKIKDPNQLP LPPVDLNIKS ISKEFKANWE LEKWLNRNSL WRAIWKSFGR TISVAMLYET 300
  301 TSDLLSVVQP QFLRIFIDGL NPETSSKYPP LNGVFIALTL FVISVVSVFL TNQFYIGIFE 360
  361 AGLGIRGSLA SLVYQKSLRL TLAERNEKST GDILNLMSVD VLRIQRFFEN AQTIIGAPIQ 420
  421 IIVVLTSLYW LLGKAVIGGL VTMAIMMPIN AFLSRKVKKL SKTQMKYKDM RIKTITELLN 480
  481 AIKSIKLYAW EEPMMARLNH VRNDMELKNF RKIGIVSNLI YFAWNCVPLM VTCSTFGLFS 540
  541 LFSDSPLSPA IVFPSLSLFN ILNSAIYSVP SMINTIIETS VSMERLKSFL LSDEIDDSFI 600
  601 ERIDPSADER ALPAIEMNNI TFLWKSKEVL TSSQSGDNLR TDEESIIGSS QIALKNIDHF 660
  661 EAKRGDLVCV VGRVGAGKST FLKAILGQLP CMSGSRDSIP PKLIIRSSSV AYCSQESWIM 720
  721 NASVRENILF GHKFDQDYYD LTIKACQLLP DLKILPDGDE TLVGEKGISL SGGQKARLSL 780
  781 ARAVYSRADI YLLDDILSAV DAEVSKNIIE YVLIGKTALL KNKTIILTTN TVSILKHSQM 840
  841 IYALENGEIV EQGNYEDVMN RKNNTSKLKK LLEEFDSPID NGNESDVQTE HRSESEVDEP 900
  901 LQLKVTESET EDEVVTESEL ELIKANSRRA SLATLRPRPF VGAQLDSVKK TAQKAEKTEV 960
  961 GRVKTKIYLA YIKACGVLGV VLFFLFMILT RVFDLAENFW LKYWSESNEK NGSNERVWMF1020
 1021 VGVYSLIGVA SAAFNNLRSI MMLLYCSIRG SKKLHESMAK SVIRSPMTFF ETTPVGRIIN1080
 1081 RFSSDMDAVD SNLQYIFSFF FKSILTYLVT VILVGYNMPW FLVFNMFLVV IYIYYQTFYI1140
 1141 VLSRELKRLI SISYSPIMSL MSESLNGYSI IDAYDHFERF IYLNYEKIQY NVDFVFNFRS1200
 1201 TNRWLSVRLQ TIGATIVLAT AILALATMNT KRQLSSGMVG LLMSYSLEVT GSLTWIVRTT1260
 1261 VTIETNIVSV ERIVEYCELP PEAQSINPEK RPDENWPSKG GIEFKNYSTK YRENLDPVLN1320
 1321 NINVKIEPCE KVGIVGRTGA GKSTLSLALF RILEPTEGKI IIDGIDISDI GLFDLRSHLA1380
 1381 IIPQDAQAFE GTVKTNLDPF NRYSEDELKR AVEQAHLKPH LEKMLHSKPR GDDSNEEDGN1440
 1441 VNDILDVKIN ENGSNLSVGQ RQLLCLARAL LNRSKILVLD EATASVDMET DKIIQDTIRR1500
 1501 EFKDRTILTI AHRIDTVLDS DKIIVLDQGS VREFDSPSKL LSDKTSIFYS LCEKGGYLK