YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	TVP38
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.59
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSQSYEAGNA NMGQGEDDEF DGYFEDFDND IMPNSNNGQR VGTNAGLSFN DEVNVNDDDF  60
   61 LDIYNMSPRE RLMHNIRKNV QKLQFYFYSL RLWQQIIIVL LGIMLMIMGI LLLVFHNAIL 120
  121 HKVVVTSNDL REKMSTHFIL MVLIFFVAFP PMIGYSLLST TTGLIYGVSF EGWVTLALGS 180
  181 VTGSIASFVV FKTILHSRAE KLVHLNRRFE ALASILQENN SYWILALLRL CPFPYSLTNG 240
  241 AIAGVYGISV RNFSIANIIT TPKLFIYLFI GSRVKSLAES ESTGSRVFDL VSIIITLLIL 300
  301 SLTAWLLYFK TKKRYLELQN RDRQVSTDQL PELSFEV

Type	Start	End	Confidence
Non-Cytoplasmic	1	95	0.95
Transmembrane Helix	96	116	0.96
Cytoplasmic	117	135	0.86
Transmembrane Helix	136	158	0.89
Non-Cytoplasmic	159	172	0.82
Transmembrane Helix	173	195	0.89
Cytoplasmic	196	224	0.89
Transmembrane Helix	225	248	0.59
Non-Cytoplasmic	249	286	0.58
Transmembrane Helix	287	309	0.90
Cytoplasmic	310	337	0.70