YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	YSR3
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.38
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTIIQTVTEL GVTEDTIKVQ MAPSGGKHLL ADPGNHPAEH FESQMSWLRF QTRQYLTRFT  60
   61 DNQSDFVHSL QKKHRTPFRD VYFKYTSLMG SHMFYVIVLP MPVWLGYRDL TRDMIYVLGY 120
  121 SIYLSGYLKD YWCLPRPKSP PVDRITLSEY TTKEYGAPSS HSANATAVSL LFFWRICLSD 180
  181 TLVWPTKLLL LSLVIFYYLT LVFGRVYCGM HGMLDLFSGA AVGAICFFIR IWVVHALRNF 240
  241 QIGEHLWFPL LSVAWGLFIL FNHVRPIDEC PCFEDSVAFI GVVSGLDCSD WLTERYGWNL 300
  301 VCSRYASCGS KVFLRPLVGV ASVIVWKDVI SKTAVYTLLI KLLRFHDDRS EKVHFHNETS 360
  361 EEEECLLYSG VSKVEIVGRF LIYAGIPTTV FLLCPVFFTW TNLR

Type	Start	End	Confidence
Cytoplasmic	1	80	0.96
Transmembrane Helix	81	104	0.81
Non-Cytoplasmic	105	159	0.72
Transmembrane Helix	160	178	0.59
Cytoplasmic	179	182	0.58
Transmembrane Helix	183	207	0.80
Non-Cytoplasmic	208	212	0.52
Transmembrane Helix	213	234	0.90
Cytoplasmic	235	244	0.57
Transmembrane Helix	245	264	0.83
Non-Cytoplasmic	265	379	0.45
Transmembrane Helix	380	401	0.89
Cytoplasmic	402	404	0.38