YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	YKR040C
Protein type:	Transmembrane
Type Confidence:	0.98
Topology Confidence:	0.40
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTSFQAVSFA LGCNTLVACY AFTVLEKRSL MTSCTNALSF LFFLLTLRRI HRHWYKPYGA  60
   61 FLLIFVLTLR WFRGPIAWVV VDVVFASCNV VFFSPALSDE NWPYVSFFGV VVVIAVHIIV 120
  121 VTHIGAFTAC CLLKRVSLKS SEEKKKKKKK KKEKSLHTER EKKKKKF

Type	Start	End	Confidence
Non-Cytoplasmic	1	5	0.40
Transmembrane Helix	6	24	0.73
Cytoplasmic	25	29	0.45
Transmembrane Helix	30	50	0.70
Non-Cytoplasmic	51	53	0.33
Transmembrane Helix	54	72	0.62
Cytoplasmic	73	75	0.46
Transmembrane Helix	76	97	0.68
Non-Cytoplasmic	98	106	0.79
Transmembrane Helix	107	132	0.84
Cytoplasmic	133	167	0.92