YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	GAP1
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.86
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	94	0.99
Transmembrane Helix	95	116	0.92
Non-Cytoplasmic	117	133	0.84
Transmembrane Helix	134	158	0.87
Cytoplasmic	159	174	0.90
Transmembrane Helix	175	197	0.88
Non-Cytoplasmic	198	205	0.84
Transmembrane Helix	206	226	0.90
Cytoplasmic	227	234	0.83
Transmembrane Helix	235	258	0.86
Non-Cytoplasmic	259	283	0.85
Transmembrane Helix	284	304	0.91
Cytoplasmic	305	322	0.91
Transmembrane Helix	323	344	0.92
Non-Cytoplasmic	345	379	0.92
Transmembrane Helix	380	402	0.87
Cytoplasmic	403	422	0.93
Transmembrane Helix	423	442	0.95
Non-Cytoplasmic	443	450	0.86
Transmembrane Helix	451	474	0.91
Cytoplasmic	475	495	0.93
Transmembrane Helix	496	517	0.91
Non-Cytoplasmic	518	529	0.81
Transmembrane Helix	530	547	0.94
Cytoplasmic	548	602	0.96

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSNTSSYEKN NPDNLKHNGI TIDSEFLTQE PITIPSNGSA VSIDETGSGS KWQDFKDSFK  60
   61 RVKPIEVDPN LSEAEKVAII TAQTPLKHHL KNRHLQMIAI GGAIGTGLLV GSGTALRTGG 120
  121 PASLLIGWGS TGTMIYAMVM ALGELAVIFP ISGGFTTYAT RFIDESFGYA NNFNYMLQWL 180
  181 VVLPLEIVSA SITVNFWGTD PKYRDGFVAL FWLAIVIINM FGVKGYGEAE FVFSFIKVIT 240
  241 VVGFIILGII LNCGGGPTGG YIGGKYWHDP GAFAGDTPGA KFKGVCSVFV TAAFSFAGSE 300
  301 LVGLAASESV EPRKSVPKAA KQVFWRITLF YILSLLMIGL LVPYNDKSLI GASSVDAAAS 360
  361 PFVIAIKTHG IKGLPSVVNV VILIAVLSVG NSAIYACSRT MVALAEQRFL PEIFSYVDRK 420
  421 GRPLVGIAVT SAFGLIAFVA ASKKEGEVFN WLLALSGLSS LFTWGGICIC HIRFRKALAA 480
  481 QGRGLDELSF KSPTGVWGSY WGLFMVIIMF IAQFYVAVFP VGDSPSAEGF FEAYLSFPLV 540
  541 MVMYIGHKIY KRNWKLFIPA EKMDIDTGRR EVDLDLLKQE IAEEKAIMAT KPRWYRIWNF 600
  601 WC