YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	GMH1
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.86
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSYLPTYSND LPAGPQGQRR RNNGNENDAR QGYGQQSVPM VIRRLFKTPK NLDLETASWE  60
   61 MFHLIFHPRK AYRSIYYQRQ TKNQWARDDP SFFIFQIALI SLSSIIWSIY NSGFNNDSDM 120
  121 GALSIIGHFF KSLVMMVILD FFIFGFIMAT IFYLLLNRSH FKFKSSQNSV VEWAYCFDVH 180
  181 CNSFLIILLC LYFIQFLLLP IINLQNWISL LIGNSLYCFA IGHYFILTFY GYNQLPFLKN 240
  241 LNFILLPTLG LSIIYLISLF GIDLSKKLSF YNY

Type	Start	End	Confidence
Cytoplasmic	1	91	0.97
Transmembrane Helix	92	111	0.95
Non-Cytoplasmic	112	132	0.89
Transmembrane Helix	133	156	0.92
Cytoplasmic	157	175	0.91
Transmembrane Helix	176	199	0.86
Non-Cytoplasmic	200	207	0.77
Transmembrane Helix	208	231	0.86
Cytoplasmic	232	240	0.82
Transmembrane Helix	241	262	0.92
Non-Cytoplasmic	263	273	0.89