YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	FCJ1
Protein type:	Transmembrane
Type Confidence:	0.49
Topology Confidence:	0.46
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MMLRTTASRK IVLRRGLASI NTGTTVASKK ASHKFRNTLW TIALSATAFY AGGIIYSQKN  60
   61 DKFGDFFSNN VPFAEDLLET YEHYHDRPTL FLEDSWDGLK AKSNDLLSGL TGSSQTRRSN 120
  121 RENIEVKKIL SLEPLNIETE NSDPQLKEII GSLNDLINSL NDSNLSIPES EFNSIKKSNQ 180
  181 NMLTNLSQLN ETLKEALSNY MIQRTSEVIT ELNTQYENSK REFEKNLQKN LLQEVDEFKE 240
  241 NLTKQKDKEL EEKLKANEEL LQAKHANEVG LLSITQVKEF NKIIKDKIEK ERNGRLAHLE 300
  301 EINSEVNDLS KSIDRSSKIL SKNEALVQLT FQVDEIKSRI NNNNLPDVNI DKELSRLKLL 360
  361 SNLLSTFNKK SCCDDGDCCS CKKGNKNEGK EGKISCKCKP KTNPPSLLSV ALDELESTCS 420
  421 GKKILSNEQI YNRWNLLADD FKTASLLPPN SGILGQLTAK VFSLFLFTKT GNPSNATDFD 480
  481 SVYARVGDNL RVSNLNDAVE EVVSLKGWPH KVCESWIEDA RRKLEVQRLV EILDCEIRTL 540
  541

Type	Start	End	Confidence
Cytoplasmic	1	37	0.46
Transmembrane Helix	38	54	0.47
Non-Cytoplasmic	55	540	0.99