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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: YKL187C
Protein type: Transmembrane
Type Confidence: 0.56
Topology Confidence: 0.50
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MRIEKHRTPL SKGIIWTILS VCLLFMFTTL ILVIVATAGS TANYKPLTNI YIGEADIKHI  60
   61 NVSKVIPQIG PILTILGSAL TAPNSSLDDI FGAMKNIADT PALTPLLTLL SNADNTTVTI 120
  121 ESLTELAPLA ISGNPASSTR QLTEINGLLK YSDNATETLD GLSRLVSASL SSASSNSSSD 180
  181 STTLVLDLLK DSDNPQNSTD ALLTLNNLTM SEKAQLLPVF RLFAFSTNQT ATMTALATLM 240
  241 NTTISSSLAQ TLLTQLQNTI SNGGSLNNTF STLQPLVPQA SAPAFDAVEL LLNQTTSTNQ 300
  301 TLSTLSDLLE QNLTQSSSAK KAFAALTQLM ENSDNSTMVV TSVQSLAAVT NTTQSTQQLI 360
  361 GLDDVISSSS NTNETLSILS ELQSGLSGNS SSVQYIPYLF SLLGASTDPK TTFSSLVTLT 420
  421 SWAQENPQTF LPILDILADA KSVQPISAEE LNAMTPNILE YLKIPIYYRL SIFTLCHANL 480
  481 ENKILDCNSP HAVQNLDFRS IIYDALVTSD FQPYLNALNI SANDLYLEGK LLHREHQYVP 540
  541 AVRSVLALNL LAIIFSFFTM IFIILLYFNR YMFKQPLWLI ALALHVCVGV ATVLAAIIIS 600
  601 VMIAIIKSGT ADDKYGVVFK AGPAYTGLIW TAFALSFIAT GLIIYTWWRN RRSGRYMSGS 660
  661 VTNRKGEIYT YGDGSAISAD RFGDHNLGDD DDADFEKQVN RNEITAIDNS SSANNTDVTG 720
  721 STSNRTELSH PDVTPKDSNG PVNNNAHLVA 

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle