YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	YKL147C
Protein type:	Transmembrane
Type Confidence:	0.98
Topology Confidence:	0.40
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSPPCNCRLL LGFLIKWRAT ASTTCGSGLF MLTSSVPLLQ EVCDASGTLA CTASLFTSSG  60
   61 GFFSKPPVVP LDFLLLLLLL LLPLLLPPLP SVKGEPDACE IPVLPPLLFF LLLLLCVLPE 120
  121 PLETSFPFIS AMQSLIRFLI NFASHSFTTD HRSFLFHSLT STNDNTRKRP DRVTNPFTIS 180
  181 RSTFSNNVVY IRIYSYSSPK YTFPC

Type	Start	End	Confidence
Cytoplasmic	1	16	0.83
Transmembrane Helix	17	39	0.73
Non-Cytoplasmic	40	67	0.53
Transmembrane Helix	68	89	0.86
Cytoplasmic	90	100	0.45
Transmembrane Helix	101	122	0.81
Non-Cytoplasmic	123	128	0.41
Transmembrane Helix	129	145	0.40
Cytoplasmic	146	205	0.53