YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	OAC1
Protein type:	Transmembrane
Type Confidence:	0.96
Topology Confidence:	0.30
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSSDNSKQDK QIEKTAAQKI SKFGSFVAGG LAACIAVTVT NPIELIKIRM QLQGEMSASA  60
   61 AKVYKNPIQG MAVIFKNEGI KGLQKGLNAA YIYQIGLNGS RLGFYEPIRS SLNQLFFPDQ 120
  121 EPHKVQSVGV NVFSGAASGI IGAVIGSPLF LVKTRLQSYS EFIKIGEQTH YTGVWNGLVT 180
  181 IFKTEGVKGL FRGIDAAILR TGAGSSVQLP IYNTAKNILV KNDLMKDGPA LHLTASTISG 240
  241 LGVAVVMNPW DVILTRIYNQ KGDLYKGPID CLVKTVRIEG VTALYKGFAA QVFRIAPHTI 300
  301 MCLTFMEQTM KLVYSIESRV LGHN

Type	Start	End	Confidence
Cytoplasmic	1	20	0.78
Transmembrane Helix	21	43	0.73
Non-Cytoplasmic	44	131	0.75
Transmembrane Helix	132	152	0.70
Cytoplasmic	153	230	0.51
Transmembrane Helix	231	247	0.30
Non-Cytoplasmic	248	324	0.57