YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	TUL1
Protein type:	Transmembrane with Signal Peptide
Type Confidence:	0.58
Topology Confidence:	0.56
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Signal Peptide	1	29	0.56
N-region	1	20
H-region	21	26
C-region	27	29
Cleavage Site	29	30
Non-Cytoplasmic	30	398	0.90
Transmembrane Helix	399	419	0.88
Cytoplasmic	420	429	0.64
Transmembrane Helix	430	453	0.83
Non-Cytoplasmic	454	458	0.67
Transmembrane Helix	459	479	0.90
Cytoplasmic	480	527	0.73
Transmembrane Helix	528	549	0.87
Non-Cytoplasmic	550	555	0.65
Transmembrane Helix	556	578	0.75
Cytoplasmic	579	602	0.76
Transmembrane Helix	603	625	0.87
Non-Cytoplasmic	626	635	0.76
Transmembrane Helix	636	655	0.90
Cytoplasmic	656	758	0.79

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MEIDGNTLVF IIVILFLFFS SPGGDGVSSQ YEFNQLQRLK QQFRTEHNTF VNMTYTDSFR  60
   61 NITGLKLSYQ DMLNNPLQNA TYPLPGKDYD RWFPNQNYMV LPNDVIEAIN TEVWNTSNDD 120
  121 ASNLFPPNIT STLLGKIDLV SNNKYEKIRM PVPRFYEPAT DFSEDIPPEG ETYWSEWPSY 180
  181 GELHNVSFQH GEIAIQISHM SNLQDNNNYL RRNFINKKND RWKLLNLQID FSDKAEKEKH 240
  241 SIYSKAVYDI QRGRILSISQ SSKFHSLFAL PHYMSFQNDY NEKIFNDVKE LVDEFWNFTD 300
  301 YTDVMTMKDV QDAYNNANFK CEYLIFLQLE PWNQYTRDQI KLIDDELNWP LGRPANLSSL 360
  361 PPINVVSGLL YSPDCGVRLG LHNVKGTRYE LKIMSIRKHL LFGIALFAAQ IYLLLTQMHH 420
  421 TNTPSMVNKI SFYCFSMINL VDGSLATLYF VAASVVPELY LPLVISAFSC FILASIFEIR 480
  481 YLISIYASQV NEQNVGIINL LRGNTGTYDE NRPRPAFIPD EGSIGGSLYG RFFFMLIIFT 540
  541 FLILSSTSWP RQLRMVFEYI LIFILNSYWI PQIFRNAVKG IPSRRERARS SIGGNRSQNK 600
  601 MPLLWSFVIG TTIIRSLPVV YVFTYSSNVF RHHKDVHFVV FLSLWLLFQI SILYSQDVLG 660
  661 SRWFLPKHTI PDGYSYFKPL SNEYISEHGG GTAEHTVDCA ICMSDVPIYI EEIPETHKVD 720
  721 QHSYMVTPCN HVFHTSCLEN WMNYKLQCPV CRSPLPPL