YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	YKL030W
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.69
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MFLCYCCCCY CFYYCIIVLL LYYYYYYYYY YYYGMSSIIF FLKIKKKIVQ IYIFIYYSIW  60
   61 FFFFKCRRWL CFVYNWLVCT DGSCWTLIIG LYTGSHIWAL THCKHSSKSR GTLTVSPGAP 120
  121 PGTCSCSIRA VPSSSACKIT AVARRAEVLV MVSRPGSNPG LESPSLSGDN SASWSTAAEI 180
  181 ILSVMVVARD STAPKPIPGK E

Type	Start	End	Confidence
Cytoplasmic	1	6	0.85
Transmembrane Helix	7	27	0.89
Non-Cytoplasmic	28	47	0.82
Transmembrane Helix	48	64	0.89
Cytoplasmic	65	71	0.71
Transmembrane Helix	72	99	0.70
Non-Cytoplasmic	100	201	0.69