YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|162279926, gi...
Protein type:	Transmembrane
Type Confidence:	0.96
Topology Confidence:	0.66
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MIVREWLFFT MAPCDAAEPW QLGFQDAATP MMQGIIDLHH DIFFFLILIL VFVLWILVRA  60
   61 LWHFHYKKNP IPQRIVHGTT IEIIWTIFPS IILMFIAIPS FALLYSMDEV VVDPAITIKA 120
  121 IGHQWYWTYE YSDYNSSDEQ SLTFDSYMIP EDDLELGQLR LLEVDNRVVV PAKTHIRIIV 180
  181 TSADVLHSWA VPSLGVKCDA VPGRLNQTSI LVQREGVYYG QCSEICGTNH AFMPIVVEAV 240
  241 SRKDYGSWVS NQLIPQTGEA

Type	Start	End	Confidence
Non-Cytoplasmic	1	41	0.66
Transmembrane Helix	42	62	0.95
Cytoplasmic	63	82	0.69
Transmembrane Helix	83	104	0.88
Non-Cytoplasmic	105	260	0.80