YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|207343442
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.70
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSTIKPSPSN NNLKVRSRPR RKSSIGKIDL GDTVPSLGTM FETKESKTAA KRRMQRLSEA  60
   61 TKNDSDLVKK IWFSFREISY RHAWIAPLMI LIAVYSAYFT SGNTTKTNVL HRFVAVSYQI 120
  121 GDTNAYGKGI NDLCFVFYYM IFFTFLREFL MDVVIRPFAI RLHVTSKHRI KRIMEQMYAI 180
  181 FYTGVSGPFG IYCMYHSDLW FFNTKAMYRT YPDFTNPFLF KVFYLGQAAF WAQQACILVL 240
  241 QLEKPRKDHN ELTFHHIVTL LLIWSSYVFH FTKMGLPIYI TMDVSDFLLS FSKTLNYLDS 300
  301 GLAFFSFAIF VVAWIYLRHY INLKILWSVL TQFRTEGNYV LNFATQQYKC WISLPIVFVL 360
  361 IGALQLVNLY WLFLIFRVLY RILWRGILKD DRSDSESDEE SDESSTTPTD STPTKKDI

Type	Start	End	Confidence
Cytoplasmic	1	79	0.99
Transmembrane Helix	80	99	0.94
Non-Cytoplasmic	100	134	0.91
Transmembrane Helix	135	155	0.84
Cytoplasmic	156	177	0.85
Transmembrane Helix	178	196	0.95
Non-Cytoplasmic	197	219	0.88
Transmembrane Helix	220	242	0.83
Cytoplasmic	243	251	0.92
Transmembrane Helix	252	272	0.88
Non-Cytoplasmic	273	296	0.80
Transmembrane Helix	297	317	0.91
Cytoplasmic	318	350	0.73
Transmembrane Helix	351	374	0.88
Non-Cytoplasmic	375	418	0.70