YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	SFC1
Protein type:	Globular with Signal Peptide
Type Confidence:	0.53
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSQKKKASHP AINLMAGGTA GLFEALCCHP LDTIKVRMQI YRRVAGIEHV KPPGFIKTGR  60
   61 TIYQKEGFLA LYKGLGAVVI GIIPKMAIRF SSYEFYRTLL VNKESGIVST GNTFVAGVGA 120
  121 GITEAVLVVN PMEVVKIRLQ AQHLTPSEPN AGPKYNNAIH AAYTIVKEEG VSALYRGVSL 180
  181 TAARQATNQG ANFTVYSKLK EFLQNYHQMD VLPSWETSCI GLISGAIGPF SNAPLDTIKT 240
  241 RLQKDKSISL EKQSGMKKII TIGAQLLKEE GFRALYKGIT PRVMRVAPGQ AVTFTVYEYV 300
  301 REHLENLGIF KKNDTPKPKP LK

Type	Start	End	Confidence
Signal Peptide	1	27	0.54
N-region	1	18
H-region	19	24
C-region	25	27
Cleavage Site	27	28
Non-Cytoplasmic	28	322	0.83