YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	MIR1
Protein type:	Transmembrane
Type Confidence:	0.86
Topology Confidence:	0.48
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSVSAAPAIP QYSVSDYMKF ALAGAIGCGS THSSMVPIDV VKTRIQLEPT VYNKGMVGSF  60
   61 KQIIAGEGAG ALLTGFGPTL LGYSIQGAFK FGGYEVFKKF FIDNLGYDTA SRYKNSVYMG 120
  121 SAAMAEFLAD IALCPLEATR IRLVSQPQFA NGLVGGFSRI LKEEGIGSFY SGFTPILFKQ 180
  181 IPYNIAKFLV FERASEFYYG FAGPKEKLSS TSTTLLNLLS GLTAGLAAAI VSQPADTLLS 240
  241 KVNKTKKAPG QSTVGLLAQL AKQLGFFGSF AGLPTRLVMV GTLTSLQFGI YGSLKSTLGC 300
  301 PPTIEIGGGG H

Type	Start	End	Confidence
Cytoplasmic	1	212	0.52
Transmembrane Helix	213	231	0.62
Non-Cytoplasmic	232	271	0.70
Transmembrane Helix	272	291	0.48
Cytoplasmic	292	311	0.53