YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	YJ24_YEAST
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.65
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MFNHDWKYSI NSKTFADLNI ELFRNHKFKT VLNYIIGVVG WNGLKLALFV SDIYTCIKLL  60
   61 AFNSWSNNII KPYLPFKISK WLFSGCILAS IVLLIWEAIA GMRIYKTGNI SLTYVNNFSR 120
  121 NLNSVLNYSK FCVYNMIERK GFRQKMTFFT FFQLKDCIRL IFTDTPRQVI NGLTLWSVLV 180
  181 TVNKNEDLGD LESFTGLINK IKNIGQTNHE EAVILSLMLF SFIIWALFVF KFLLAVICSI 240
  241 FVYYKIINDQ EYSGLREYIC VTVSENVDEL VERQRKKEND DTIYKTGLLE SQTFDDFKEV 300
  301 ENKIETSFND TSYASNNDSM IELIERRPEY KSQDVCGPIP TMKKTETMES FVDNGNPQYT 360
  361 TRFSAILDSP YINSYESNDI KKAKIQSRSV NTPKYEDLSS SDIFNKIHSA GQLKSTTSME 420
  421 FHGPLDSMPN TTNNIRNFNS NSSRPRPPPL QTKSSINSKA DSNDNGRIYT PMKAYFREPD 480
  481 LPRKGLLEDE DRTYNYT

Type	Start	End	Confidence
Cytoplasmic	1	30	0.89
Transmembrane Helix	31	55	0.65
Non-Cytoplasmic	56	77	0.71
Transmembrane Helix	78	100	0.86
Cytoplasmic	101	221	0.78
Transmembrane Helix	222	244	0.85
Non-Cytoplasmic	245	497	0.80