YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	YJR015W
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.73
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTSSLDDIEP TAYNNMEADE EYCRRNDIHD LSSVVGDAVS QGVPDMDGQT TDSSKDPEPN  60
   61 SEDKKAFPPS SGSFFSPNLQ GQRKKVLLKF VFTNCLLAII CFTMFVLFWG ALYDTSKYLH 120
  121 KVKLLVVIQE PPVVILDNNS SMVVPSISYA LPTFINKIPC DWDIYNSPTF QAKFDVNTPQ 180
  181 QVNDKVVDLV YDEKYWFAIN IKPNATETLF ESLINDTAPL FNSTLFNQVV YETGRDPTNL 240
  241 KSTILPVAQT IEEYYHTFYT LNYLPPLLTN ITQVYRYALT NNARYIAAAG KYNYEYYDHR 300
  301 PFTDRILLAP TQIGVVYCLL LTFFQFLLYG PLHVEMAKVL RPANGLIYRI AMSWFTFFFA 360
  361 SLFFCTTTAI FQVDFTKSFG RGGFVVYWMS TWLFMLAAGG ANENAVMLVI TLGPQYLGFW 420
  421 ILSFVILNIA PSFFPLALNN NVYRYGYMMP VHNVIDIYRV IFFDVTRRKM GRNYGILVAL 480
  481 IALNTALLPF VGKYASRKLK QKALVAAKQS

Type	Start	End	Confidence
Cytoplasmic	1	89	0.95
Transmembrane Helix	90	112	0.92
Non-Cytoplasmic	113	308	0.90
Transmembrane Helix	309	330	0.89
Cytoplasmic	331	349	0.76
Transmembrane Helix	350	371	0.92
Non-Cytoplasmic	372	383	0.75
Transmembrane Helix	384	406	0.80
Cytoplasmic	407	415	0.63
Transmembrane Helix	416	438	0.89
Non-Cytoplasmic	439	472	0.76
Transmembrane Helix	473	492	0.91
Cytoplasmic	493	510	0.73