YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	GPI14
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.62
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKLLNQAISR KRALILESIW LLNPMVITIS TRGNAESVLC CLIMFTLFFL QKSRYTLAGI  60
   61 LYGLSIHFKI YPIIYCIPIA IFIYYNKRNQ GPRTQLTSLL NIGLSTLTTL LGCGWAMYKI 120
  121 YGYEFLDQAY LYHLYRTDHR HNFSVWNMLL YLDSANKENG ESNLSRYAFV PQLLLVLVTG 180
  181 CLEWWNPTFD NLLRVLFVQT FAFVTYNKVC TSQYFVWYLI FLPFYLSRTH IGWKKGLLMA 240
  241 TLWVGTQGIW LSQGYYLEFE GKNVFYPGLF IASVLFFVTN VWLLGQFITD IKIPTQPTVS 300
  301 NKKNN

Type	Start	End	Confidence
Cytoplasmic	1	20	0.84
Transmembrane Helix	21	50	0.74
Non-Cytoplasmic	51	65	0.73
Transmembrane Helix	66	85	0.92
Cytoplasmic	86	96	0.78
Transmembrane Helix	97	118	0.87
Non-Cytoplasmic	119	201	0.63
Transmembrane Helix	202	221	0.62
Cytoplasmic	222	235	0.56
Transmembrane Helix	236	257	0.80
Non-Cytoplasmic	258	263	0.81
Transmembrane Helix	264	285	0.91
Cytoplasmic	286	305	0.80