YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	HXT8
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.87
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	61	0.98
Transmembrane Helix	62	82	0.90
Non-Cytoplasmic	83	114	0.93
Transmembrane Helix	115	135	0.91
Cytoplasmic	136	144	0.76
Transmembrane Helix	145	166	0.93
Non-Cytoplasmic	167	172	0.89
Transmembrane Helix	173	194	0.94
Cytoplasmic	195	203	0.86
Transmembrane Helix	204	224	0.90
Non-Cytoplasmic	225	236	0.82
Transmembrane Helix	237	258	0.89
Cytoplasmic	259	322	0.97
Transmembrane Helix	323	341	0.87
Non-Cytoplasmic	342	361	0.84
Transmembrane Helix	362	383	0.87
Cytoplasmic	384	390	0.93
Transmembrane Helix	391	411	0.94
Non-Cytoplasmic	412	430	0.88
Transmembrane Helix	431	454	0.90
Cytoplasmic	455	465	0.90
Transmembrane Helix	466	488	0.88
Non-Cytoplasmic	489	493	0.82
Transmembrane Helix	494	514	0.92
Cytoplasmic	515	569	0.98

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTDRKTNLPE EPIFEEAEDD GCPSIENSSH LSVPTVEENK DFSEYNGEEA EEVVVPEKPA  60
   61 SAYATVSIMC LCMAFGGFMS GWDTGTISGF VNQTDFLRRF GNYSHSKNTY YLSNVRTGLI 120
  121 VSIFNVGSAI GCLFLSKLGD IYGRCMGLII VIVVYMVGIV IQIASIDKWY QYFIGRIIAG 180
  181 IGAGSISVLA PMLISETAPK HIRGTLLACW QLMVTFAIFL GYCTNYGTKT YSNSVQWRVP 240
  241 LGLCFAWAII MIGGMTFVPE SPRFLVQVGK IEQAKASFAK SNKLSVDDPA VVAEIDLLVA 300
  301 GVEAEEAMGT ASWKELFSRK TKVFQRLTMT VMINSLQQLT GDNYFFYYGT TIFKSVGMND 360
  361 SFETSIVLGI VNFASCFFSL YSVDKLGRRR CLLLGAATMT ACMVIYASVG VTRLYPNGKS 420
  421 EPSSKGAGNC TIVFTCFYIF CFSCTWGPVC YVIISETFPL RVRSKCMSVA TAANLLWGFL 480
  481 IGFFTPFITS AINFYYGYVF MGCLAFSYFY VFFFVPETKG LTLEEVDEMW MDGVLPWKSE 540
  541 SWVPASRRDG DYDNEKLQHD EKPFYKRMF