YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	YJL193W
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.48
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	11	0.73
Transmembrane Helix	12	32	0.86
Non-Cytoplasmic	33	48	0.68
Transmembrane Helix	49	70	0.86
Cytoplasmic	71	104	0.71
Transmembrane Helix	105	121	0.54
Non-Cytoplasmic	122	131	0.49
Transmembrane Helix	132	155	0.68
Cytoplasmic	156	163	0.85
Transmembrane Helix	164	185	0.93
Non-Cytoplasmic	186	200	0.95
Transmembrane Helix	201	222	0.91
Cytoplasmic	223	271	0.95
Transmembrane Helix	272	292	0.95
Non-Cytoplasmic	293	312	0.84
Transmembrane Helix	313	347	0.63
Cytoplasmic	348	353	0.43
Transmembrane Helix	354	386	0.66
Non-Cytoplasmic	387	402	0.48

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MFQQLSASIR HNAHIIFLCI SWYFISSLAS QVTKQVLTVC PLPLFLGEFQ FIYTAVLAWF  60
   61 TCYIAYSFPG FYRIFPNGTF PEYYIDDRET SRAARKESKL SSLIIPPSKP ILQTVLPLGL 120
  121 FQFVGKYFGH TATSLVPVST VASIKTLSPM FILLLQKILK ISTLKITLTL IFSLCTLVLG 180
  181 VWIIVQEDNR SPASSNELRE FSKYGVICAM ISMFIFVLQN IYGKTVFTYR SQTDESQSNS 240
  241 GFSRQESPLP LYEKLDEKLV AKKKPKSYDK LTLMIYISLV GFCLSFGWFI TLEFPVLFRY 300
  301 FFQINSSSTV IKAFPVSLFL LNGTFHFIQA MITFHLLGEV STLTYSIANL MKRFAIIAVS 360
  361 WVFIGRRITW LQVFGLVLNT LGLFLYERCT SQSKIKAKIR PE