YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	IRC9
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.62
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTMQKASKVN MEVRTTLVTM QATTMSIILA LPLVVLIAST LVLSVKGRRI HLATSPIILL  60
   61 LLILFKKGQQ ARSINFTLSK NKSLFCLTFL NYPFHFITAW CHNDILNKYE FCLFLIFLIR 120
  121 IVITINKVTL

Type	Start	End	Confidence
Cytoplasmic	1	16	0.93
Transmembrane Helix	17	42	0.85
Non-Cytoplasmic	43	49	0.72
Transmembrane Helix	50	65	0.95
Cytoplasmic	66	82	0.78
Transmembrane Helix	83	99	0.73
Non-Cytoplasmic	100	105	0.58
Transmembrane Helix	106	124	0.71
Cytoplasmic	125	130	0.62