YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	CG31030-PB
Protein type:	Transmembrane with Signal Peptide
Type Confidence:	0.99
Topology Confidence:	0.54
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MQLILVATLL CLIIGSCSAS ISGPFIFWGH SRVSSQQTQA LVESSSRELP LTQLFTEAKA  60
   61 IVVFVRNTTN RLEGTRYPKF QNLVKSGAWT YLPQRSLAAE PFGLNANIEV VSLSGHGEED 120
  121 DSEILLAYNE AVNTYGRGEV LGILGSREEE AHFLAKREAA PGGEEEEKAK AAEGSEETEA 180
  181 SFIYVAEGNK AVLSLNGPLE LRVTNDTLKL EEHIKQITFD DQRAKGYGRL SITFMHSGEK 240
  241 CTLRFKFSLI RGSWTLRNVE VEYRELKSVL VARGDEYTLP SAPLGFSYRC SAESVNFLNP 300
  301 ARNETIQSLL LSDFQVQPWL NGRPEYGEVY DCIGFVSAPI LAGLFVVTLL LGILGLGISA 360
  361 MLSMHTPNRF ESSRSKQSRA AMFIQITYVA FKPLALFTLA IEFFLIHLLF VLIVLYVYVL 420
  421 WYY

Type	Start	End	Confidence
Signal Peptide	1	19	0.98
N-region	1	10
H-region	11	16
C-region	17	19
Cleavage Site	19	20
Non-Cytoplasmic	20	339	0.99
Transmembrane Helix	340	362	0.89
Cytoplasmic	363	380	0.84
Transmembrane Helix	381	399	0.66
Non-Cytoplasmic	400	402	0.44
Transmembrane Helix	403	422	0.85
Cytoplasmic	423	423	0.54