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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: gi|116008046, gi...
Protein type: Transmembrane
Type Confidence: 0.63
Topology Confidence: 0.36
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKSSQLADSL VIPALQQFNN SSLRSHNVKL HCARMGESQL LLLLRLLLLP TVLISWMHCA  60
   61 GASTADIYKG ARLGHRIVQT RYGRLHGLIL PLDSFRFLRS VEVFLGVPYA TPPTKQNRFS 120
  121 PTRAPAPWDG IRISDKYSPV CPQRLPNIQN ETAALEKMPK GRLEYLKRLL PFLENQSEDC 180
  181 LYLNVFSPVN AGANEKKLPV IVFIHGESFE WSSGNPYDGS VLASYGEVVV VTLNYRLGIL 240
  241 GFLNANPNPH AHARVANYGL MDQMAALHWI QQNIQKFGGD PNSVTLAGHG TGAACINYLM 300
  301 TSPTMVRGLF HRAILMSGSA YSSWALVEDP VLFAIKLAKE VNCTIPDDIN RHHEQIVDCL 360
  361 RDVPLEDLYL ADIQAPNFLT SFGPSVDGVV IRPGHSNLDI DDLMARNSRR SSADSGFQSS 420
  421 AGGGGGQGGG AGGGGGGGSG SSFGGGYFGG SGAGTMNMGG HYDVLFGVVT GESIWRFSAH 480
  481 DIQNGFEGER RDKIIRTYVR NAYNYHLNEI FYTIVNEYTD WDRTSQHPIN TRDTAVAALS 540
  541 DAQFVAPIVR AGDILAANSP PPVSSSSTAG SPGANAAAST SAGSTQPSGR CYFYVFDYQT 600
  601 KDGDYPQRMG TVHGEDLPYI FGAPLVDGFS HFPQNYTKSE TALSEAVMIF WTNFARTGNP 660
  661 NEHHRQDSSL PVSKERNRFR SITWENYDPL HQKYLEIGMK PRIKNHFRAH QLSIWLRLIP 720
  721 ELHRAGMEDV IARHNLFRNH DDMDLYEGPV KPDPFGISTA AGASGSSSSS SSSSRLLLVD 780
  781 EQLMMKKGRG LNGSAYLNGI LGVTTVEPNN MYTTCIPIGG NYSSSGGVFA PTTLANASSD 840
  841 TLASGFEAAG YAAYSTALSV TIAIGCSLLI LNVLIFAGVY YQRDKTRLEV KTLQKQYQQR 900
  901 SLHQQVPYPP EPIKHAHYHM GHSQSSANVI VDVESHQDQA GQAAMLLQAA AAAAAAAAND 960
  961 VKPPPPHICS NTGMQQQQQV GGGSGGALNN GGIEGSKVTT DNLGNVTYST SSKQQQQHQQ1020
 1021 QQQQQQREHM QIKGMTGTQT FGRSGSGSGG GAGGGAGSAS GGASVVVSGS SVSYNPGMMT1080
 1081 LPKSGGLHHA ATLNYARNTT ALNMSGGGTA LVDSRGNVLL TSTAVGPGMA GTGAGGGSSG1140
 1141 GGGGGDCMTL PRNLGLAAAG RHNPTTELQQ YQQQQQSSKH QSNGAVLTGM QSHHIRGPRP1200
 1201 PLRTASSTTT NSSSNNSAMG VAVGVGGGVG NMLLDQTPSG GSSSSGVSSA PSSSKGHHTH1260
 1261 SHSHAAHLVH SHGDGLVLTS ASPVGGQQQQ HPQQHQHPQQ QQQVPQAAMD EMRV

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle