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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: gi|113194754, gi...
Protein type: Transmembrane with Signal Peptide
Type Confidence: 0.87
Topology Confidence: 0.69
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MVMLLSKRQL PPSAATRTRR KVPPTRRRST WALSSLLALV VLDICIARCL AAGISYSSNS  60
   61 GNLSTSQKSP SSANNGGLVL IGSSSATSSS VPSLSLTSSS SAGLSSPGSS SSSSSSSTST 120
  121 SGSNSNRSSR PTSNNSNSNS NYSPNHDQLP AQLSSRIINT RNGAISGVIV QLDGRHLDPV 180
  181 EAYRGIPYAS PPVGNLRFMP PVSAAMWSGV KKADRFSPVC PQRLPDIHNE TAALERMPKG 240
  241 RLEYLKRLLP YLQNQSEDCL YLNIYVPIQV GSRDSSGSSS SSSAGSSSSG SGGSSSSSSS 300
  301 SSTSSSSAGS GSPAKYPVLV FVHGESYEWN SGNPYDGSVL ASYGQILVVT INYRLGVLGF 360
  361 LNANTDRYSK LPANYGLMDI IAALHWLKEN IAAFGGDPNS ITLAGHGTGA ACVHFLISSM 420
  421 AVPEGLLFNR AILMSGSGLA PWSLVSNPAK YAAIVAHHVN CASDLPHAHL MKCLREKTLD 480
  481 QLLSVPIRPP EFGFAFGPSI DGVVIDGGDY VPPAPGSPAA QAQAQASTAA GNGLGGEAGI 540
  541 AAAGGWGTPG QLENIGRYDL MAGVTRAEAF FSFNSGDVQY GIEADRRSRI LKAYVRNTYT 600
  601 FHLNEIFATI VNEYTDWERP VQHPINIRDE TLEALSDAQV VAPAAQTVDL HSADHRNSYL 660
  661 YVFDYQTRFG DYPQRQGCIH GEDLPYIFGA PLVGGFNHFT RNYTKTEISL SEVVMFYWSN 720
  721 FVRTGNPNEQ METEHGSRQE RSRYKTIEWT AYESVHKKYL NFDTKPKLKN HYRAHRLSFW 780
  781 LNLIPDLHKP GGDNVPAAHH QLHDDDDEDN NIPSDASVKP LNPPYISRAA NAAAMANFTI 840
  841 FTNQVFSLLN LSSPSSSLQR NGTRYGGGKI YPDDMMDGDH AGGAASASQD SDGFAAYSTA 900
  901 LSVTIAIGCS LLILNVLIFA GVYYQRDKTR LSEPRPQTKL KRQENGQMPN NICGDLETLT 960
  961 IHAKSDPATI LSHHHAMQHH QLPPPEFADI PHRAPPPPKH MKSLQDPGGG GSVSGAVGVS1020
 1021 GVVQMPPPHA LQVMGNQCGT LTKKSCMKQT QAQAQQHSPA QQQQQQQQQQ QQHVVTHQQH1080
 1081 LQNHHNQSMT TVLTTAGGLV VPTPPTVPVI VASTTQHQQH QQQHQQQQHQ QQQQQQQQQH1140
 1141 PLMDELRV

YRC Informatics Platform - Version 3.0
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