YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	PRM10_YEAST
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.79
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	61	0.95
Transmembrane Helix	62	84	0.86
Non-Cytoplasmic	85	88	0.78
Transmembrane Helix	89	108	0.92
Cytoplasmic	109	116	0.75
Transmembrane Helix	117	136	0.86
Non-Cytoplasmic	137	141	0.75
Transmembrane Helix	142	166	0.83
Cytoplasmic	167	181	0.74
Transmembrane Helix	182	203	0.92
Non-Cytoplasmic	204	216	0.78
Transmembrane Helix	217	237	0.84
Cytoplasmic	238	244	0.64
Transmembrane Helix	245	263	0.85
Non-Cytoplasmic	264	269	0.74
Transmembrane Helix	270	288	0.90
Cytoplasmic	289	294	0.67
Transmembrane Helix	295	314	0.79
Non-Cytoplasmic	315	349	0.85
Transmembrane Helix	350	373	0.90
Cytoplasmic	374	383	0.91

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MIVSFGDATT RTSEVQLVRC TQGLNLWKLH QVHAVYKRVV HDTLGADEGN ALLDQILADT  60
   61 NLYPPWMCVL LYAFCSAMVT PYAFGGDWVN LAISFFMGLC VGSLQFILSQ KSYMYSNVFE 120
  121 ISASIVVSFC GRAFGSIPRS HICFGAVTQG SLALILPGYI ILCGALELQS RSLVAGAVRM 180
  181 FYAIIYSLFL GFGITLGSAL FGWMYHNATN EISCPQLISP WFRFLFVPAF TISISLLNQA 240
  241 HISQLPVMVF ISCTGYVVTY WAGKHFANST EFTAALAAFV IGVLGNLYSR IWKGLAVSAM 300
  301 LPAIFVQVPS GIASQNSLLS GLQSANTIVN ANETITTSTS DPSSSMSFGM TMIQVCVGIS 360
  361 VGLFASSLFV YPFGKKKTGL FSL