YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	GWT1
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.63
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	20	0.65
Transmembrane Helix	21	45	0.63
Non-Cytoplasmic	46	66	0.38
Transmembrane Helix	67	101	0.71
Cytoplasmic	102	133	0.81
Transmembrane Helix	134	157	0.87
Non-Cytoplasmic	158	168	0.82
Transmembrane Helix	169	192	0.80
Cytoplasmic	193	207	0.88
Transmembrane Helix	208	228	0.92
Non-Cytoplasmic	229	240	0.88
Transmembrane Helix	241	260	0.91
Cytoplasmic	261	360	0.55
Transmembrane Helix	361	385	0.83
Non-Cytoplasmic	386	400	0.59
Transmembrane Helix	401	419	0.79
Cytoplasmic	420	442	0.64
Transmembrane Helix	443	462	0.79
Non-Cytoplasmic	463	470	0.71
Transmembrane Helix	471	490	0.95
Cytoplasmic	491	498	0.84

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MATVHQKNMS TLKQRKEDFV TGLNGGSITE INAVTSIALV TYISWNLLKN SNLMPPGISS  60
   61 VQYIIDFALN WVALLLSITI YASEPYLLNT LILLPCLLAF IYGKFTSSSK PSNPIYNKKK 120
  121 MITQRFQLEK KPYITAYRGG MLILTAIAIL AVDFPIFPRR FAKVETWGTS LMDLGVGSFV 180
  181 FSNGIVSSRA LLKNLSLKSK PSFLKNAFNA LKSGGTLLFL GLLRLFFVKN LEYQEHVTEY 240
  241 GVHWNFFITL SLLPLVLTFI DPVTRMVPRC SIAIFISCIY EWLLLKDDRT LNFLILADRN 300
  301 CFFSANREGI FSFLGYCSIF LWGQNTGFYL LGNKPTLNNL YKPSTQDVVA ASKKSSTWDY 360
  361 WTSVTPLSGL CIWSTIFLVI SQLVFQYHPY SVSRRFANLP YTLWVITYNL LFLTGYCLTD 420
  421 KIFGNSSEYY KVAECLESIN SNGLFLFLLA NVSTGLVNMS MVTIDSSPLK SFLVLLAYCS 480
  481 FIAVISVFLY RKRIFIKL