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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: gi|113197860, gi...
Protein type: Transmembrane
Type Confidence: 0.63
Topology Confidence: 0.53
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MQRKKIDNRI RVLIENGVAQ KHRSFFVVVG DQGKDQVVIL HHMLSKATVR ARPSVLWCYK  60
   61 KELGFSSNRK KKMRKLQKRI KSGSLNIKED DPFELFVAAT NIRYCYYNET HKILGNTYGM 120
  121 CVLQDFEALT PNLLARTVET VEGGGIVVLL LRTMSSLKQL YTMTMDVHSR YRTEAHQDVV 180
  181 VRFNERFILS LASCKTCMVI DDQLNILPIS SHIANIKPIP PKAQDASLSP EEQELQDVKL 240
  241 SLQDTQPVGV LVENCKTLDQ AKAVLKFIEA VSEKTLRSTV TLTAARGRGK SAALGLAIAG 300
  301 AVAFGYSNIF VTSPSPDNLH TLFEFIFKGF DSLQYQEHMD YEIIQSLNPE FEKAVVRVNV 360
  361 FKEHRQTIQY IHPADAVKLG QAELVVIDEA AAIPLPLVKN LMGPYLVFMA STINGYEGTG 420
  421 RSLSLKLIQQ LRQQSADSQV TVTAENKSTA SNRLASARTL HEVTLQESIR YAPGDPVEKW 480
  481 LNDMLCLDCM NISRIISGCP LPETCDLYYI NRDTLFCYHK ASESFLQRLM ALYVASHYKN 540
  541 SPNDLQMMSD APAHHLFCLL PPVPPTQNSV PEVLAVVQVC LEGEISRQSI LSSLSRGKKA 600
  601 SGDLIPWTVS EQFQDPDFGS LSGGRVVRIA VHPDYQGMGY GSRALRLVQM YYEGQFPCLE 660
  661 ENATNKPQEI TSVSSEAVSL LEESLTPRKN LPPLLLRLSE RPAEKLDYLG VSYGLTPKLL 720
  721 KFWKRAGFVP VYLRQTPNDL TGEHSCVMLK TLHEDEESDQ EPWLTAFWKD FRKRFLSLLS 780
  781 YQFSTFAPSL ALNILQNRNI KKESENLISR SELEAGLTPY DLKRLEMYSR NMVDYHLIMD 840
  841 LIPSLARMYF LQQLGGLSLS AAQSALLLGI GLQHKSVDQL EKEIELPSSQ LMGLFNRIIR 900
  901 KIVQLFNRIQ ERAVEEEMAT TKEVVMEPTL KSLQEDLEEA GKEFQEKHKQ EVEKLKGINL 960
  961 SEYVIRGDDE EWNEVLKKTG QNASVISMKS DKKRKLEQPE KEGFKQKKNL KKKK

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle