YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|113197910, gi...
Protein type:	Transmembrane with Signal Peptide
Type Confidence:	0.78
Topology Confidence:	0.77
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MPQGFLLNPQ HLLWILLASP LMAVECCNEA LYSHVMNEFC LQHFEIEMEE LGKKLWCDWG  60
   61 ETAGMYADLT NCTVILAENL DCFWPNHLVD HFFIVIHKKY FSNCSLTGRL PADPPFPILC 120
  121 SFIFVPVLIT LLMTALVVWR SKRSEGIV

Type	Start	End	Confidence
Signal Peptide	1	26	0.77
N-region	1	17
H-region	18	23
C-region	24	26
Cleavage Site	26	27
Non-Cytoplasmic	27	115	0.94
Transmembrane Helix	116	139	0.88
Cytoplasmic	140	148	0.90