YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	LOH1
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.53
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MRFQLFIYFY FTIVVIAGTN TIQQFSDAGD RLITSLRNLD NNGTYETLTA EKVPIIEGQI  60
   61 QNISAKYEQH TFILKGLEAV LNYKVKSLDN NERESLEIEY EKVEKALDAA LNVSPFEYIK 120
  121 KFKEVSRGKV VNALENLSRE QNRITINGGR EDEKEKEARE KKKRLDRIKR ILTVSLLELG 180
  181 LAQGVADLCA VAPFACLLGV TVGSIGFIFW LALIYNAIQ

Type	Start	End	Confidence
Non-Cytoplasmic	1	5	0.53
Transmembrane Helix	6	23	0.57
Cytoplasmic	24	167	0.91
Transmembrane Helix	168	186	0.70
Non-Cytoplasmic	187	190	0.52
Transmembrane Helix	191	214	0.87
Cytoplasmic	215	219	0.61