YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	CG7255-PG, CG725...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.89
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	33	0.96
Transmembrane Helix	34	55	0.92
Non-Cytoplasmic	56	65	0.78
Transmembrane Helix	66	87	0.92
Cytoplasmic	88	97	0.84
Transmembrane Helix	98	118	0.93
Non-Cytoplasmic	119	160	0.95
Transmembrane Helix	161	182	0.91
Cytoplasmic	183	190	0.80
Transmembrane Helix	191	211	0.92
Non-Cytoplasmic	212	240	0.93
Transmembrane Helix	241	261	0.90
Cytoplasmic	262	276	0.92
Transmembrane Helix	277	301	0.89
Non-Cytoplasmic	302	320	0.92
Transmembrane Helix	321	343	0.93
Cytoplasmic	344	368	0.89
Transmembrane Helix	369	390	0.91
Non-Cytoplasmic	391	395	0.81
Transmembrane Helix	396	417	0.90
Cytoplasmic	418	474	0.96
Transmembrane Helix	475	498	0.89
Non-Cytoplasmic	499	505	0.82
Transmembrane Helix	506	527	0.96
Cytoplasmic	528	535	0.93
Transmembrane Helix	536	557	0.93
Non-Cytoplasmic	558	564	0.79
Transmembrane Helix	565	585	0.92
Cytoplasmic	586	607	0.95

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MVRQISPWKV LTRRKNLQAD GSEGETKLNR VLGLWDLTAL GVGSTLGAGV YVLAGQIAKD  60
   61 QAGPSVMISF AIAALASLLA GVCYAEFGAR VPKAGSAYVY SYVCIGEFVA FVIGWNLILE 120
  121 YVIGTASVCR GISLYLDSLL NDTLKYTFAE VAPMNVSFLG SYFDFLAFGL VVVFGVALAF 180
  181 GVETSTMANN FVTCLNIFIL GFVIIAGALK ADYSNWTVDP STVSANSTIG SGGFFPFGFE 240
  241 GTLRGAATCF FGFVGFDCIA TTGEEVRNPR KNIPKSILLS LLIIFLCYFG VSTVLTLMLP 300
  301 YYIQDVNAPL PYAFEYVGWP VAMWIVTVGG LVGLLASLFG ALFPLPRVMY SMAQDGLLFK 360
  361 FLGKVSPRFR VPVTGSIVAA LFTAAIAGLF DLSQLVSLLS IGTLLAYSVV AISIMLLRYM 420
  421 DYCEVDENPG QREVRASETT SLTSSSERFT FGSVCTQLFN VHRVQEPNAI SSRIVGVLST 480
  481 LFCLISLGIG VLIMQAHLLI ASKEVWALTL LIVLVVLMLL VICLICLQPR EARRRLFRVP 540
  541 FVPIVPAISI FINIYLMLQL DTWTWIRFGV WMIVGLSIYF FYGLPNSYRE MKRQRAGWQK 600
  601 LKYSDRL